Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21650 775 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 772 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 677 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT1G13460 662 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G09880 615 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 591 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 582 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT5G25510 563 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 552 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G226200 [exp] 929 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 723 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 716 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G180000 [exp] 707 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G179900 [exp] 704 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 699 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 626 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 617 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 571 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035321 [exp] 768 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 763 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 752 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 721 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10032082 [exp] 704 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10037057 [exp] 653 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10036926 [exp] 652 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10023920 [exp] 619 / 0 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10022612 [exp] 610 / 0 AT3G09880 770 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10011381 [exp] 607 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01603 [poplar] [flax] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Potri.014G157000.1 pacid=42763825 polypeptide=Potri.014G157000.1.p locus=Potri.014G157000 ID=Potri.014G157000.1.v4.1 annot-version=v4.1 ATGATCAAACAAATACTGGGTAAGCTACCTCGAAAACCCTCAAGATCATCGAGTAACGACTCAAACAATGATGGTGGACTCAATGCCCACTCGTCTTTGA ACTCATCCCATGGAGCGAATTCCATTAACAACTCAAAGCCCTCTTCCAATTCATCCAAAACTTCGAATCCGAGTTTGGGCGCTTCACGCTTGAACAATGG GATCCTGGCACCGAATAGCAAGATGAATCAAGGGAAAAAGTCAGCTCCCCAATTGGGTCCTGTGATGACTTCTGGGGTTTATGAGGCATTGCCTAGCTTT CGTGATGTTCCTAATTCAGAGAAGCCGAATCTCTTTATTAAGAAGGTGAACATGTGTTGCGTTGTGTTTGATTTTAGTGATCCCTCTAAGAATCTAAAAG AGAAGGACATTAAGAGGCAGACTTTGCTTGAGCTTGTTGATTATATTTCAACTGTGACTTCAAAGTTCAATGAGATGGCAATGCAAGAAATTACAAAGAT GGTGGCAGCCAATTTGTTCAGAACACTTCCATCTGCAAACTATGATAACAAGATTCTAGAAATGTTTGATCCCGAAGATGAAGAGCCAGCTATGGAGCCG GCTTGGCCTCATCTTCAGATTGTTTATGAGTTTCTGCTTAGATTTGTGGCTTCATCAGAAACTGATGCCAAGCTTGCCAAGAGATACATTGACCATTCAT TTGTGCTGAGACTGCTGGACTTATTTGATTCTGAGGACCAAAGAGAGAGGGAGTATTTGAAGACGATACTCCACCGCATTTATGGGAAGTTCATGGTACA TCGACCATTCATTAGGAAGGCTATCAACAATATCTTTTACAGATTCATTTTCGAGACAGAGAGGCATAATGGGATTGCAGAAATGCTTGAGATATTGGGA AGCATTATTAATGGGTTTGCTCTGCCATTGAAGGAAGAGCACAAGCTTTTTCTTGTCCGTGCCTTAATTCCACTTCACAAGCCCAAGTGTGTATCGATGT ATCATCAACAACTGTCATACTGTATCACTCAATTCGTGGAGAAAGATTTCAAGCTGGCTGATACTGTAATTCGAGGTCTCTTAAAGTATTGGCCCATAAC TAATAGTTCCAAGGAAGTTATGTTTCTTGGTGAGTTGGAGGAGGTCTTAGAGGCTACTCAGGCAGCAGAATTTCAGCGGTGCATGGTTCCTTTATTCCAT CAAATTGGACGCTGCCTCAACAGCTCACATTTTCAGGTTGCAGAACGTGCATTGTTTTTGTGGAACAATGATCACATAAGAAATTTGATCACGCAGAATC GCAGAGTGATACTGCCTATAATCTTCCCAGCTTTGGAGAGAAACACAAGGGGGCATTGGAACCAAGCTGTTCAGAGTTTGACCCTGAATGTCAGGAAGAT ATTCTCAGATGCTGATCAAGAACTTTTTGATGAGTGCTTGGTCAAATTCGAAGAAGATGAAGTGAAGCAGATGGAGACACGGGAGAAAAGAGAATTAACT TGGAAGCGGTTGGAAGATTTGGCAACCTCCAAGGCTGTAAGCAATGAGGCTGTGCTTGTCCCAAGTTCTGTCTCGTCTATTGCCATTGCCACTGGAACAA GTCCTCGGACCACTGCAGGTGGTTGA
AA sequence Show only first row Show all	>Potri.014G157000.1 pacid=42763825 polypeptide=Potri.014G157000.1.p locus=Potri.014G157000 ID=Potri.014G157000.1.v4.1 annot-version=v4.1 MIKQILGKLPRKPSRSSSNDSNNDGGLNAHSSLNSSHGANSINNSKPSSNSSKTSNPSLGASRLNNGILAPNSKMNQGKKSAPQLGPVMTSGVYEALPSF RDVPNSEKPNLFIKKVNMCCVVFDFSDPSKNLKEKDIKRQTLLELVDYISTVTSKFNEMAMQEITKMVAANLFRTLPSANYDNKILEMFDPEDEEPAMEP AWPHLQIVYEFLLRFVASSETDAKLAKRYIDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIFETERHNGIAEMLEILG SIINGFALPLKEEHKLFLVRALIPLHKPKCVSMYHQQLSYCITQFVEKDFKLADTVIRGLLKYWPITNSSKEVMFLGELEEVLEATQAAEFQRCMVPLFH QIGRCLNSSHFQVAERALFLWNNDHIRNLITQNRRVILPIIFPALERNTRGHWNQAVQSLTLNVRKIFSDADQELFDECLVKFEEDEVKQMETREKRELT WKRLEDLATSKAVSNEAVLVPSSVSSIAIATGTSPRTTAGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21650			Protein phosphatase 2A regulat...		Potri.014G157000 [exp]	0	1
AT1G79090			unknown protein		Potri.011G143900 [exp]	3.31	0.8717
AT4G11860			Protein of unknown function (D...		Potri.001G112300 [exp]	4.24	0.8139
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.002G152100 [exp]	5.83	0.8140	PLDBETA1.1
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.011G152500 [exp]	6.70	0.7838
AT1G53190			RING/U-box superfamily protein...		Potri.011G097100 [exp]	17.60	0.7820
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.011G086500 [exp]	20.73	0.7931	FIM1.1
					Potri.001G077600 [exp]	24.97	0.8094
AT5G61910			DCD (Development and Cell Deat...		Potri.001G136300 [exp]	31.93	0.7455
AT4G11860			Protein of unknown function (D...		Potri.003G119800 [exp]	47.74	0.7642
AT5G27520		AtPNC2, PNC2	peroxisomal adenine nucleotide...		Potri.010G092100 [exp]	50.19	0.7753

Compare expression of checked genes

Potri.014G157000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.