Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrNtr1-2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21670 774 / 0 Major facilitator superfamily protein (.1) AT1G12110 506 / 5e-174 CHL1-1, CHL1, B-1, ATNRT1, NRT1.1 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) AT2G26690 462 / 5e-157 Major facilitator superfamily protein (.1) AT3G54140 379 / 6e-125 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 370 / 3e-121 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 364 / 9e-119 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 362 / 2e-118 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G33440 357 / 1e-115 Major facilitator superfamily protein (.1) AT1G59740 350 / 2e-113 Major facilitator superfamily protein (.1) AT1G68570 341 / 1e-109 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225500 [exp] 951 / 0 AT3G21670 736 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 503 / 3e-173 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.009G042400 [exp] 390 / 3e-129 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 387 / 8e-128 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 387 / 1e-127 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.005G233500 [exp] 381 / 5e-125 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G029200 [exp] 370 / 6e-121 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.004G229000 [exp] 370 / 1e-120 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.016G111900 [exp] 366 / 7e-120 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030006 [exp] 754 / 0 AT3G21670 800 / 0.0 Major facilitator superfamily protein (.1) Lus10035317 [exp] 746 / 0 AT3G21670 801 / 0.0 Major facilitator superfamily protein (.1) Lus10032252 [exp] 507 / 1e-174 AT1G12110 771 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10024614 [exp] 481 / 2e-164 AT1G12110 737 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Lus10018553 [exp] 469 / 2e-159 AT2G26690 852 / 0.0 Major facilitator superfamily protein (.1) Lus10039782 [exp] 466 / 2e-158 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10030081 [exp] 455 / 1e-153 AT2G26690 788 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 377 / 5e-124 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011055 [exp] 375 / 6e-123 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 370 / 6e-121 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.014G157500.1 pacid=42764779 polypeptide=Potri.014G157500.1.p locus=Potri.014G157500 ID=Potri.014G157500.1.v4.1 annot-version=v4.1 ATGGTTTTAGCAACAAGCCACAGTGGGAAAGATGGTGCGCACGCTGATCCTGCAGTAGACTTTCGAGGAAATCCTGTGGACAAGTCCAGAACTGGAGGAT GGCTTGCTGCGGGGCTCATTTTGGGGACCGAACTTTCAGAGAGAATATGCGTCATGGGCATATCAATGAATTTAGTGACATACCTAGTAGGAGAGCTGCA TATTTCATCAGCAAAATCTGCAACCATAGTCACCAATTTCATGGGTACTCTCAACCTTCTCGGCCTCCTAGGAGGTTTCTTGGCAGATGCTAAGCTTGGT CGGTACTTGGCAGTTGCTATCTTCGCATCCATAACTGCTTTGGGGCTCAGTCTATTAACCATGGCCACAACCATTCCTACCATGAGACCCCCACAGTGCG ATGACTACAGGAAACAGCATTATCAGTGTATCGAGGCCAGTGGAAATCAACTGGCTCTGCTATATGCAGCACTTTATACCACAGCACTTGGTGGTGGTGG AATTAAGTCTAATGTCTCAGGTTTTGGATCTGATCAGTTCGATCAAACAGATCCCAAGGAGGAGAAGGCGATGCATTTCTTCTTCAATAGGTTCTATTTT TGCATTAGCATCGGGTCATTGTTTGCGGTTATAGTGCTTGTATACATACAAGATAACGTGGGAAGAGGGTGGGGATATGGAATTTCAGCGGGGACGATGG TGATCGCAGTAGCAGTATTGCTCTGTGGGACACCGTGGTACCGTTTCAAGAAGCCTCGAGGTAGCCCATTAACTACCATATGGAGGGTATCACTCTTGGC ATGGAAGAAGAGGAGGCACCCTTATCCTTCCCATCCCAGCCTTCTGAATGATTATGACAGTGCCACAGTTCCCCACACAGAGAAATTCAAGTATCTTGAC AAGGCTGCAATCATGGATCCCACCTCCAGCGCACAAAAAAATGACCCTTGGATAGTATCGACAGTTACGGAAGTTGAAGAAGTGAAGATGGTACTAAAGC TCATCCCAATTTGGTCTACATGTATCCTCTTTTGGACAGTCTACTCTCAAATGACTACTTTCACCATTGAACAAGCGACCTTCATGAACAGAAAAGTTGG CTCCTTGGTTATTCCTTCAGGTTCATACTCCACCTTTCTCTTTATCACCATTCTCCTCTTTACATCCCTAAATGAAAGACTCTTCATTCCCCTGGCTCGA AAGCTCACCCACAACGCACAAGGACTGACAAGCCTTCAAAGGATTGGAATTGGACTCTTTCTTTCAATACTAGCTATGGTGGCTGCTGCTATCATTGAGA AAGAAAGAAGGGAAACTGTTATTCAACAAAATACAATGATAAGTGCCTTTTGGCTAGTCCCTCAATATTTCCTAGTGGGTGCCGGGGAGGCTTTCGTTTA TGTTGGACAACTTGAGTTTTTCATCAGAGAGGCACCAGAAAGGATGAAATCAATGAGCACTGGGCTTTTCCTTAGCAGCATCTCAATGGGTTTCTTTGTT AGCAGTTTGTTGGTGTCTTTAGTTGACAAAGCTACCAAGAAAATCTGGCTCAGGAGCAACTTGAATAAAGGGAGGTTAAATAACTTCTATTGGATGCTTG CAGTGCTAGGACTGTTGAACCTATTCATTTTCCTAGTTTTTGCAAGGGAGCATCAGTACAAAGTCCAGCAGTATATCAAGCCCAAGAACTCTGAAGAGAA AGAGCTTAAAACTGCAAATGATTTGACTGTTTTAGAGATGGTGAAGGAGGAGGAAATGATTTAA
AA sequence Show only first row Show all	>Potri.014G157500.1 pacid=42764779 polypeptide=Potri.014G157500.1.p locus=Potri.014G157500 ID=Potri.014G157500.1.v4.1 annot-version=v4.1 MVLATSHSGKDGAHADPAVDFRGNPVDKSRTGGWLAAGLILGTELSERICVMGISMNLVTYLVGELHISSAKSATIVTNFMGTLNLLGLLGGFLADAKLG RYLAVAIFASITALGLSLLTMATTIPTMRPPQCDDYRKQHYQCIEASGNQLALLYAALYTTALGGGGIKSNVSGFGSDQFDQTDPKEEKAMHFFFNRFYF CISIGSLFAVIVLVYIQDNVGRGWGYGISAGTMVIAVAVLLCGTPWYRFKKPRGSPLTTIWRVSLLAWKKRRHPYPSHPSLLNDYDSATVPHTEKFKYLD KAAIMDPTSSAQKNDPWIVSTVTEVEEVKMVLKLIPIWSTCILFWTVYSQMTTFTIEQATFMNRKVGSLVIPSGSYSTFLFITILLFTSLNERLFIPLAR KLTHNAQGLTSLQRIGIGLFLSILAMVAAAIIEKERRETVIQQNTMISAFWLVPQYFLVGAGEAFVYVGQLEFFIREAPERMKSMSTGLFLSSISMGFFV SSLLVSLVDKATKKIWLRSNLNKGRLNNFYWMLAVLGLLNLFIFLVFAREHQYKVQQYIKPKNSEEKELKTANDLTVLEMVKEEEMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21670			Major facilitator superfamily ...		Potri.014G157500 [exp]	0	1	PtrNtr1-2
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Potri.010G111700 [exp]	2.82	0.8843
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108500 [exp]	9.16	0.8947	LEA1.6
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.002G056800 [exp]	11.13	0.9078
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Potri.001G424700 [exp]	16.06	0.8969
AT5G24850		CRY3	cryptochrome 3 (.1)		Potri.006G277500 [exp]	19.67	0.8833
					Potri.015G143150 [exp]	22.44	0.8913
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.017G142700 [exp]	22.58	0.8717
AT3G52740			unknown protein		Potri.004G202900 [exp]	23.23	0.8920
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	31.01	0.8736
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016400 [exp]	32.66	0.8768

Compare expression of checked genes

Potri.014G157500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.