Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32990 800 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G64390 625 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 613 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G48930 550 / 0 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44550 480 / 3e-166 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44540 477 / 5e-165 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44560 472 / 3e-163 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT2G44570 454 / 7e-156 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT4G02290 446 / 1e-152 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 440 / 2e-150 ATCEL2 cellulase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356000 [exp] 761 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 622 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 616 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.007G071200 [exp] 595 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.002G225200 [exp] 559 / 0 AT2G32990 465 / 2e-163 glycosyl hydrolase 9B8 (.1) Potri.002G202400 [exp] 455 / 5e-156 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 451 / 8e-155 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.014G126900 [exp] 447 / 3e-153 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.006G219700 [exp] 444 / 3e-152 AT3G43860 689 / 0.0 glycosyl hydrolase 9A4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035316 [exp] 791 / 0 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10009724 [exp] 723 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10001833 [exp] 624 / 0 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 620 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10003888 [exp] 610 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 602 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10033957 [exp] 593 / 0 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10017402 [exp] 553 / 0 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10008208 [exp] 471 / 3e-162 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 454 / 5e-156 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.014G157600.1 pacid=42763383 polypeptide=Potri.014G157600.1.p locus=Potri.014G157600 ID=Potri.014G157600.1.v4.1 annot-version=v4.1 ATGGCCATGGAGAAAAAGCAGCAGCACCAATGTTATGGAGCAGCTCCAAAACCCACCTTCAGATTTGCAAAACACTGGGCTGTTCTCTTGATCTCTATCT TCCCCATCTTGAATACAGGTCTTGCTGTTGATTACGGTGATGCCTTAAAAAAGAGCCTTCTTTACTTCGAATCACAACGTTCCGGTCGCTTACCCTACAA CCAGAGAGTAACATGGCGTCACCATTCTGGACTCACTGATGGCTTGGAACAAGGGGTGGATTTGGTCGGAGGATATTATGATGCAGGGGACCATGTAAAA TTTGGACTACCAATGGCCTTCACCGTGACAATGCTTTCATGGACTGTAATAGAATTCCAACATCAGATTGCCGTTGCCGGAGAATTGGAACACGCATTAG AAGCAATCAAATGGGGAACTGATTATTTCATCAAGGCACATACTAGCCCGAATGTGCTATGGGCAGAGGTGGGTGACGGTGACACCGACCACTATTGCTG GCAACGGCCGGAGGACATGACCACATCACGGCAAGCTTACAGGATCGACGAGAATAATCCCGGGTCAGATCTTGCTGGAGAAACCGCGGCGGCAATGGCG GCGGCATCAATAGTGTTCAAGAAAACAAACCCTCATTACTCTCACCTGCTCTTGCACCATGCCCAACAGTTGTTTGAGTTTGGAGACAAGTATAGAGGTA AATATGATGAAAATATGGGTGTGGTGAAAAGCTACTATGCGTCGGTGAGTGGATACAAAGACGAATTGCTATGGGGAGCTCTGTGGCTGTACAAGGCCAC CGACAATGAAAAGTATCTCGAGTACGTCATTAACAATGCTCATTGTTTTGGCGGGACTGGTTGGGCCATGGAAGAATTCAGCTGGGATGTGAAGTATGCT GGCCTTCAAATTATGGCTGCAAAGTTGCTCGTGGAAGAAAAGCACAGGGAACATGGCGACACGTTGGAACAATACCGATCAAAAGCCGAGCACTACCTAT GCTCATGCCTTAACAAAAACAACGGTACCAATGTGAATCGTACCCCAGGTGGTCTATTGCACATCCGGCAATGGAACAACATGCAGTATGTCTCAACGGC AGCATTCCTTCTCACTGTATACTCCGATTTCCTTCTAAACTCGAATCAAAAGCTCAAATGCCATGGTGGATCTGTGGATCACGAAGAGATCCTCGGTTTT GCTAAATCTCAGGTTGATTACATCCTAGGTTCAAACCCAATGAACATGAGTTATTTAGTGGGATACGGCCCTAAATACCCCGCAAGAGTGCACCATAGAG GGGCCTCAATTGTGTCATACAGAGAGAACAAGGGGTTCATTGGGTGCACCCAAGGGTACGACAATTGGTATGGCCGGGAGGAGCCTAACCCAAATGTTTT AGTCGGAGCATTGGTCGGAGGACCTGATTGTCAGGATAACTTCACGGACCAGAGAAGCAATTACATGCAGACTGAGGCCTGCACATACAATACAGCACCA CTAGTTGGAGTTTTTGCCAAGTTATTACAAATGGAGGGCCAAAAGAGCCATGATAATCACAATCAGCCTTTGGTAGCTTCCTATTAA
AA sequence Show only first row Show all	>Potri.014G157600.1 pacid=42763383 polypeptide=Potri.014G157600.1.p locus=Potri.014G157600 ID=Potri.014G157600.1.v4.1 annot-version=v4.1 MAMEKKQQHQCYGAAPKPTFRFAKHWAVLLISIFPILNTGLAVDYGDALKKSLLYFESQRSGRLPYNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDHVK FGLPMAFTVTMLSWTVIEFQHQIAVAGELEHALEAIKWGTDYFIKAHTSPNVLWAEVGDGDTDHYCWQRPEDMTTSRQAYRIDENNPGSDLAGETAAAMA AASIVFKKTNPHYSHLLLHHAQQLFEFGDKYRGKYDENMGVVKSYYASVSGYKDELLWGALWLYKATDNEKYLEYVINNAHCFGGTGWAMEEFSWDVKYA GLQIMAAKLLVEEKHREHGDTLEQYRSKAEHYLCSCLNKNNGTNVNRTPGGLLHIRQWNNMQYVSTAAFLLTVYSDFLLNSNQKLKCHGGSVDHEEILGF AKSQVDYILGSNPMNMSYLVGYGPKYPARVHHRGASIVSYRENKGFIGCTQGYDNWYGREEPNPNVLVGALVGGPDCQDNFTDQRSNYMQTEACTYNTAP LVGVFAKLLQMEGQKSHDNHNQPLVASY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.014G157600 [exp]	0	1
AT1G23000			Heavy metal transport/detoxifi...		Potri.008G128400 [exp]	1.00	0.9060
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.010G133300 [exp]	3.46	0.8597
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.010G133200 [exp]	5.19	0.8568
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167900 [exp]	7.93	0.8087
AT1G10740			alpha/beta-Hydrolases superfam...		Potri.008G187900 [exp]	9.16	0.7983
AT4G33670			NAD(P)-linked oxidoreductase s...		Potri.009G081300 [exp]	13.85	0.7765
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.002G199200 [exp]	29.66	0.8276
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.002G150500 [exp]	31.74	0.7660	CYP76.3
AT2G15580			RING/U-box superfamily protein...		Potri.006G190300 [exp]	35.28	0.8260
AT1G22170			Phosphoglycerate mutase family...		Potri.002G093300 [exp]	38.10	0.7696

Compare expression of checked genes

Potri.014G157600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.