Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32980 429 / 9e-153 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G225100 [exp] 551 / 0 AT2G32980 436 / 1e-155 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035310 [exp] 444 / 7e-159 AT2G32980 446 / 1e-159 unknown protein Lus10030015 [exp] 397 / 9e-141 AT2G32980 402 / 2e-142 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15003 [poplar] [flax] HAUS2 HAUS augmin-like complex subunit 2
Representative CDS sequence Show only first row Show all	>Potri.014G158000.1 pacid=42764712 polypeptide=Potri.014G158000.1.p locus=Potri.014G158000 ID=Potri.014G158000.1.v4.1 annot-version=v4.1 ATGTCCATGGGCAACGATACAACCTGGGTTGGTAAAAAGCCCATCAGACGCATCGGTGGCATGTCCGATGCCCTCTCCATCGCTGCCGATCTCGGATTTT CTGTTGCCTCTCCCCCTTCTCAGGAACAGCTTGAGAAGTTATCCACCACAAGTGGCGAAAAGGGTGATGACTTAATTAGAGTTTTAAGGGAACTAACTGC AGTCCAAAGAAAAATAGCTGATCTACAAGTAGAACTTCAGGGTCGCAAGGATGACAAAAATGTGGCGCATTTGACGCATGTCAGTGAAATGGAAAAGAAG ATTGACACATTATCAAGGATTACTACCATACTGAAGGATGTCATTCATAATAAGGATCGCATTATAGCTCGTCTTCAACAACCATATTCACTGGATTGCA TACCAGTAGAAGCAGAATACCAGAAACAATTTTCAGAATTGCTGATGAAGGCCGCTGGTGATTATGGTGCTTTGACAGCTTCAGCTGCAGATTTCCAATG GAGCCAGAACTTTAAGGAGTCTCCTTCAGTGTGGGGGGAAATGTTACGTCCTATTCCTGTTGCTTTAGCATCCTGCACTCGATTCTTTGAAGCCATGTCT GCCATGAGAGAATCATTTGCTACCCTTCAAAATTTGAGAGTTGGCCATTTAGGTAAAGATTCTTCAGAGAGAGTATTTGGGGATTCACACTGTGTGACTC CTCCCTGGAGAAATGACTCAAGCTTTGATGACTTGGCAATGAAAACTGTGAGGAGACAAGAACTTGAGCGGCAAGAAGCATGTGATGGAAGTGGTGATGG AGGTGGCGTTCATCAAGTCGATGACACAAGCCATAGGAGATTATCTTGGCCTCCATCTGTTAAACACAATGGTATATAA
AA sequence Show only first row Show all	>Potri.014G158000.1 pacid=42764712 polypeptide=Potri.014G158000.1.p locus=Potri.014G158000 ID=Potri.014G158000.1.v4.1 annot-version=v4.1 MSMGNDTTWVGKKPIRRIGGMSDALSIAADLGFSVASPPSQEQLEKLSTTSGEKGDDLIRVLRELTAVQRKIADLQVELQGRKDDKNVAHLTHVSEMEKK IDTLSRITTILKDVIHNKDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAAGDYGALTASAADFQWSQNFKESPSVWGEMLRPIPVALASCTRFFEAMS AMRESFATLQNLRVGHLGKDSSERVFGDSHCVTPPWRNDSSFDDLAMKTVRRQELERQEACDGSGDGGGVHQVDDTSHRRLSWPPSVKHNGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32980			unknown protein		Potri.014G158000 [exp]	0	1
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	3.00	0.9448
AT3G44150			unknown protein		Potri.016G068000 [exp]	3.16	0.9556
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	3.60	0.9564
AT4G15830			ARM repeat superfamily protein...		Potri.010G014200 [exp]	4.24	0.9514
AT2G03350			Protein of unknown function, D...		Potri.008G092500 [exp]	4.24	0.9461
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Potri.001G326600 [exp]	4.58	0.9460	Pt-ARP2.1
AT5G45290			RING/U-box superfamily protein...		Potri.003G106600 [exp]	4.89	0.9448
AT4G27435			Protein of unknown function (D...		Potri.001G403600 [exp]	5.29	0.9496
AT1G27170			transmembrane receptors;ATP bi...		Potri.012G053200 [exp]	6.00	0.9250
AT4G35880			Eukaryotic aspartyl protease f...		Potri.007G063800 [exp]	7.74	0.9430

Compare expression of checked genes

Potri.014G158000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.