Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) AT2G45720 186 / 6e-52 ARM repeat superfamily protein (.1.2) AT5G50900 181 / 4e-50 ARM repeat superfamily protein (.1) AT1G61350 173 / 7e-47 ARM repeat superfamily protein (.1) AT1G01830 135 / 8e-34 ARM repeat superfamily protein (.1.2.3) AT2G28830 56 / 9e-08 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 50 / 2e-06 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G23140 47 / 5e-05 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G44120 44 / 0.0003 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224400 [exp] 704 / 0 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.011G042300 [exp] 194 / 1e-54 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.004G033800 [exp] 191 / 1e-53 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.015G103700 [exp] 173 / 3e-47 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.002G153700 [exp] 173 / 4e-47 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.014G076500 [exp] 169 / 1e-45 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.012G104400 [exp] 167 / 4e-45 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.009G165900 [exp] 54 / 3e-07 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.001G238500 [exp] 49 / 1e-05 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029995 [exp] 400 / 5e-134 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10035337 [exp] 343 / 1e-113 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2) Lus10029996 [exp] 257 / 7e-83 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10035338 [exp] 256 / 1e-82 AT2G05810 239 / 4e-76 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 159 / 5e-42 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10041369 [exp] 157 / 3e-41 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10002598 [exp] 137 / 4e-34 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10018423 [exp] 127 / 5e-31 AT1G61350 499 / 2e-171 ARM repeat superfamily protein (.1) Lus10016848 [exp] 84 / 2e-17 AT2G45720 326 / 8e-108 ARM repeat superfamily protein (.1.2) Lus10016016 [exp] 47 / 3e-05 AT5G42340 702 / 0.0 Plant U-Box 15 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G158700.2 pacid=42764273 polypeptide=Potri.014G158700.2.p locus=Potri.014G158700 ID=Potri.014G158700.2.v4.1 annot-version=v4.1 ATGCATCCCACCACCACCAACGAACCACCGCAAACACTCCTTGACCTAATAACAGACGTCCTCTCCCTCCTCCTCCTCTCCACCATAACCGTCCAATCCT TCATCGGACGGTGGCAAGTACTTCGAACAAAACTCACCTCTCTCCAGTCCTCTCTTTCTTCTCTCTCCGAATCCCCTCTTTGGTCCCAAAACCCTCTTCT TCACACTCTCCTCCCTTCTCTCCTCTCCACTCTCCAACGCCTCCTCGCCCTCTCCCGCCAATGCTCCTCTACCAGCTCCTTACCTGGCGGCAAGCTCCTC TTCCAAAGCGACCTTGACATCGCCTCCTCTTCCCTCTCCAATCACCTCCACGACCTTGATTTACTTCTCAGATCCGGAGTGCTTCACCACTCTAATGCTA TTATTCTGTCTCACCCAGGTCCCGGTTCCGACAAAGAGGACTTAGTTTTTTTCATCCACGATCTTTTCACCAGATTACAAGTCGGTGGTGTGGAGTTTAA AAGGAAAGCGTTAGAGTCACTTCTTCAGATTCTAAACACAGACAAAAAATCAGCCAGTTTAGTTGTCAAGGAAGGAAATATTGGGTATTTGACCGGTTTG CTCGATTTTAACGATCAGCCGTTGATTCGAGAACAAGCTGTTTCGGCTGTGTCAATACTGGCTGCGTCCAACGATGAATCAAGAAAGATTATATTCGAAG AGGGTGGATTGGGACATTTGTTGAGGATTCTTGAAACAGGGTCGATGCCTTTAAAAGAAAAGGCTGCCATTGCGATTGAAGCAATCACCGGCGATCCTGA CAATGGATGGGCTATTTCAGCATATGGTGGTGTTTCAGTGCTGATTGAAGCTTGCCGTTGTGGATCACAAGCGACACAAACACACGCAGTGGGTGCCATT CGAAATGTTGCTGGAGTAGAGGACATCAAGATGGCTTTAGCAGAGGAAGGTGTTGTTCCGGTTATTATTCATTTGATTGTTTCAGGTTCAAGTGCTGCAC AAGAAAAGGCAGCTAATACTATAGCAATACTAGCCTCTTCCGGGGGGTATTTTCGCGATTTGATAATACAAGAGAAGGGGTTGCAGAGATTAATGCATTT GATTCAAGATTTGTCAAGTTCAGATACAATAGAGCATGTTCTACGTGCAATTAGCTCTCTCTCGGTCTCAGATTCCACAGCTCAGGTTCTGTCGTCATCA ACTGCTCTAATCATCCATCTCGGCGAGTTTATAAAACATGGAAACATGACTTTGCAGAAAATTTCAGCATCTTTACTAGCTAATTTATCCATTAGTGATC GCAACAAGCGAGCTATAGCTAGCTGCATGGGTTCACTGGTAAAGCTGATGGAGTCGCCGAAGCCAGTGGGTCTACAAGAGGCAGGAGCGCTTGCGTTGGT GTCATTGTTGACAGCCCGATGGAACAAGAAAGAATTGGTGAGGGATGAAAAGAGTTTGATGAAGGTGGTGCAGATGTTGGATCCAAAGTATGAGCTTATT GACAAGAAGTTTCCGGTGATGCTCGTGAATGCATTATTGAGTGGACGGAGCAGTGGGTGTAGGAAGAGGCTGTTGGACGCCGGAGCTTGCCAGCATCTAC AGAAGCTGGCGGAGATGGAGGTTTCCGGTGCTAAGAAAGCATTGCAGAGACTTTCTGGGATTAGCCTCAAGAGCATGTTCTCTAGGACTTGGAGGGAATA A
AA sequence Show only first row Show all	>Potri.014G158700.2 pacid=42764273 polypeptide=Potri.014G158700.2.p locus=Potri.014G158700 ID=Potri.014G158700.2.v4.1 annot-version=v4.1 MHPTTTNEPPQTLLDLITDVLSLLLLSTITVQSFIGRWQVLRTKLTSLQSSLSSLSESPLWSQNPLLHTLLPSLLSTLQRLLALSRQCSSTSSLPGGKLL FQSDLDIASSSLSNHLHDLDLLLRSGVLHHSNAIILSHPGPGSDKEDLVFFIHDLFTRLQVGGVEFKRKALESLLQILNTDKKSASLVVKEGNIGYLTGL LDFNDQPLIREQAVSAVSILAASNDESRKIIFEEGGLGHLLRILETGSMPLKEKAAIAIEAITGDPDNGWAISAYGGVSVLIEACRCGSQATQTHAVGAI RNVAGVEDIKMALAEEGVVPVIIHLIVSGSSAAQEKAANTIAILASSGGYFRDLIIQEKGLQRLMHLIQDLSSSDTIEHVLRAISSLSVSDSTAQVLSSS TALIIHLGEFIKHGNMTLQKISASLLANLSISDRNKRAIASCMGSLVKLMESPKPVGLQEAGALALVSLLTARWNKKELVRDEKSLMKVVQMLDPKYELI DKKFPVMLVNALLSGRSSGCRKRLLDAGACQHLQKLAEMEVSGAKKALQRLSGISLKSMFSRTWRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05810			ARM repeat superfamily protein...		Potri.014G158700 [exp]	0	1
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.017G146800 [exp]	5.91	0.9203
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	6.48	0.9381
AT1G01180			S-adenosyl-L-methionine-depend...		Potri.014G103800 [exp]	10.19	0.9212
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.011G083100 [exp]	15.19	0.9327	PLCYC4.2
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096800 [exp]	16.24	0.9143
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Potri.009G066000 [exp]	22.75	0.9164
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.001G082150 [exp]	23.06	0.9078
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Potri.009G024000 [exp]	29.39	0.8987
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G147600 [exp]	29.66	0.9026
					Potri.010G007932 [exp]	30.98	0.8990

Compare expression of checked genes

Potri.014G158700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.