Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05000 309 / 6e-108 AtPFA-DSP1 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT2G32960 286 / 3e-98 AtPFA-DSP2 plant and fungi atypical dual-specificity phosphatase 2, Phosphotyrosine protein phosphatases superfamily protein (.1) AT4G03960 276 / 6e-95 AtPFA-DSP4 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) AT3G02800 211 / 2e-69 AtPFA-DSP3 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1) AT5G16480 204 / 1e-66 AtPFA-DSP5 plant and fungi atypical dual-specificity phosphatase 5, Phosphotyrosine protein phosphatases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G224000 [exp] 365 / 6e-130 AT1G05000 300 / 9e-105 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.004G002800 [exp] 293 / 1e-101 AT1G05000 286 / 4e-99 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Potri.011G021100 [exp] 293 / 2e-101 AT4G03960 288 / 4e-100 plant and fungi atypical dual-specificity phosphatase 4, Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.013G086500 [exp] 208 / 3e-68 AT3G02800 296 / 2e-103 plant and fungi atypical dual-specificity phosphatase 3, Tyrosine phosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031529 [exp] 325 / 1e-114 AT1G05000 304 / 2e-106 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10015154 [exp] 320 / 5e-112 AT1G05000 298 / 3e-103 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10035333 [exp] 313 / 5e-109 AT1G05000 291 / 2e-100 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10029991 [exp] 312 / 2e-108 AT1G05000 296 / 1e-102 plant and fungi atypical dual-specificity phosphatase 1, Phosphotyrosine protein phosphatases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF13350 [poplar] [flax] Y_phosphatase3 Tyrosine phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.014G159100.4 pacid=42763217 polypeptide=Potri.014G159100.4.p locus=Potri.014G159100 ID=Potri.014G159100.4.v4.1 annot-version=v4.1 ATGAAAATTGACCACAACTCCACCACCTCTGCCACCAACGGAGGTGACACTACCGTCTTCAGGACTATCGAAGTGGCAGTTTTTGACCGCCGCGATCTCA GTCCACCTCCGGTCGTCGCTTCTCCTTCTCCGGTTGTCGGAGACGAACTCAATCTTATTCCACCTCTAAACTTTGCTATGGTAGATAATGGCATCTTTAG GTCTGGTTTTCCTGACTCTGCTAACTTCGCTTTTCTCCAAACTCTCGGCCTCCGCTCTATCATATGTCTATGTCCTGAGCCGTATCCAGAGGCGACCACG GAGTTTCTAAAGGATGGTGGAATCAGGCTCTATCAATTTGGGATCGAAGGTTACAAGGAGCCATTCGTAAACATCCCAGAGGATACAATTCGTGAAGCAC TGAAAGTGGTCCTTGATGCAAAGAATCATCCGGTTTTGATTCATTGTAAACGAGGAAAGCACCGAACTGGTTGTCTTGTGGGTTGCCTGAGAAAATTGCA AAAGTGGTGTCTCTCATCCATATTTGATGAGTATCAGCGGTTTGCAGCCGCAAAGGCTAGGGTTTCGGATCAAAGGTTTATGGAGTTGTTTGATGTTTCT ACCTTAAAGCATATGCCAATGTCATTTTCATGCTCGAAGAGGAAAGGTGGTGAGTTTCTGGATCCATTTCTGCGGCAAAAGGAATAA
AA sequence Show only first row Show all	>Potri.014G159100.4 pacid=42763217 polypeptide=Potri.014G159100.4.p locus=Potri.014G159100 ID=Potri.014G159100.4.v4.1 annot-version=v4.1 MKIDHNSTTSATNGGDTTVFRTIEVAVFDRRDLSPPPVVASPSPVVGDELNLIPPLNFAMVDNGIFRSGFPDSANFAFLQTLGLRSIICLCPEPYPEATT EFLKDGGIRLYQFGIEGYKEPFVNIPEDTIREALKVVLDAKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLSSIFDEYQRFAAAKARVSDQRFMELFDVS TLKHMPMSFSCSKRKGGEFLDPFLRQKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.014G159100 [exp]	0	1
					Potri.005G172250 [exp]	6.32	0.8792
AT1G04960			Protein of unknown function (D...		Potri.014G160800 [exp]	16.12	0.8577
AT5G14710			unknown protein		Potri.001G349500 [exp]	18.00	0.8632
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Potri.009G087000 [exp]	18.76	0.8526	SMH901
AT3G48480			Cysteine proteinases superfami...		Potri.015G090800 [exp]	32.03	0.8532
					Potri.002G088800 [exp]	34.29	0.8581
AT3G62040			Haloacid dehalogenase-like hyd...		Potri.002G185300 [exp]	36.02	0.8583
AT5G39590			TLD-domain containing nucleola...		Potri.002G025032 [exp]	40.29	0.8557
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Potri.010G129600 [exp]	40.74	0.8527
AT3G20800			Cell differentiation, Rcd1-lik...		Potri.011G086800 [exp]	41.17	0.8554

Compare expression of checked genes

Potri.014G159100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.