Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AGO902
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32940 1169 / 0 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21150 1097 / 0 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 1091 / 0 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT5G21030 926 / 0 PAZ domain-containing protein / piwi domain-containing protein (.1) AT5G43810 503 / 4e-163 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G48410 500 / 1e-161 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT2G27880 484 / 7e-156 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 403 / 2e-125 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G31280 335 / 6e-100 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 324 / 8e-95 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219700 [exp] 1192 / 0 AT2G27040 1403 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.008G010500 [exp] 1180 / 0 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 1138 / 0 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.006G025900 [exp] 1134 / 0 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.012G037100 [exp] 518 / 4e-168 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 516 / 2e-167 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.010G081300 [exp] 498 / 2e-161 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 494 / 8e-160 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.009G001500 [exp] 475 / 7e-153 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035331 [exp] 1340 / 0 AT2G32940 1080 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10015155 [exp] 1313 / 0 AT2G32940 1069 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10029989 [exp] 1164 / 0 AT2G32940 947 / 0.0 ARGONAUTE 6, Argonaute family protein (.1) Lus10025537 [exp] 1024 / 0 AT5G21030 1234 / 0.0 PAZ domain-containing protein / piwi domain-containing protein (.1) Lus10026750 [exp] 1023 / 0 AT5G21150 1253 / 0.0 ARGONAUTE 9, Argonaute family protein (.1) Lus10017983 [exp] 521 / 6e-168 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 518 / 8e-168 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 513 / 3e-165 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 496 / 6e-162 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 496 / 2e-160 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain CL0219 [poplar] [flax] RNase_H PF02171 [poplar] [flax] Piwi Piwi domain CL0219 [poplar] [flax] PF08699 [poplar] [flax] ArgoL1 Argonaute linker 1 domain CL0219 [poplar] [flax] PF16486 [poplar] [flax] ArgoN N-terminal domain of argonaute CL0219 [poplar] [flax] PF16487 [poplar] [flax] ArgoMid Mid domain of argonaute CL0219 [poplar] [flax] PF16488 [poplar] [flax] ArgoL2 Argonaute linker 2 domain
Representative CDS sequence Show only first row Show all	>Potri.014G159400.1 pacid=42762433 polypeptide=Potri.014G159400.1.p locus=Potri.014G159400 ID=Potri.014G159400.1.v4.1 annot-version=v4.1 ATGGAGAAAATATCAGGTGGATCTCCACCCCCACCTCCTCCACCGTCAGTACCAGCAAACATGAACCCAGAATTGGTTGAAGTTCCCCGGCATCCAGAAC GATCAGCCATTCCCAAATATTCTATGATCAGTAGGCGTGGGGTTGGGACTAGTGGGCGTCACATATCTTTGCTCACCAACCACTTTAAAGTTTCTGTCAA TGTTCCAGATGCAGTATTTTACCAGTATAATGTTTCCATTACCTCAGAAGATAATAGAGCTGTTGAAAGCAAGGGAATTGGGAGGAAACTGATCGATAGG CTTTACCAAACTTATTCCTCAGAATTTGCTGGTAAAAGATTTGCTTATGATGGGGAGAAAAGTTTGTACACTGTGGGCCCTCTTCCACAGAACAAGTCGG AGTTCACAGTGGTGCTTGAGGAATCTTTTGCAAAACATGAAAGTGGGAGCCCTGGTGGTGGTGAGAGCCCTCCTGCAGCTGTTAAGCGATCAAAGCGCTC TTATCGGTCAAAGACTTTTAAGGTAGAAACAAGCTATGCTGCTAAAATCCCCTTGAAGTCAATAGCCCTTGCCCTCAAAGGAATTGAGATAGACAATAGC ACTCAGGATGCACTCAGAGTGCTGGATATTATCTTAAGGCAGCAAGCAGCTAACAGGGGGTGCCTTTTGGTTAGGCAGTCGTTCTTTCATGATGATTCAA GGAACTTCAATGATGTGGGAGGTGGTGTAACTGGTGTTAAGGGTTTCCATTCTAGCTTCCGTACCACTCAGGGTGGCTTGTCTCTTAACATGGATGTGTC CACTACAATGATCCTAACTCCTGGGCCAGTAATTGATTTTCTGATAGTTAATCAAAATGTCCGGGAACCTCGCTATGTTGATTGGGTGAAGGCCAGAAGG ATGTTGAAAAATTTGAGGGTGAAGACGAAGCATAACAACATGGAGTTTAAAATAATTGGTCTGAGTGAGAAGCCATGCAATCAACAATATTTTCCTATGA AACTGAAAAACAGGGACGGAGCTAATGTTGAAGCACAGATTGTTGAAGTTACTGTATATGATTATTTCACTAAACACTGTGGCATACAACTTGGTTATTC TGCATACCTACCCTGCCTTGATGTTGGTAAACCAAAACGTCCAAACTACCTGCCACTGGAGCTTTGTTCACTTATTTCACTTCAACGGTATAAAAAAGCT TTATCTTCAATGCAAAGAGCATCTTTGGTTGAAAAATCACGACAAAAGCCTCAGGAAAGAATAAAAACTGTGACTGAAGCCATGAGAAGCTACTGTTATG ATGAGGATCCTGTGCTTTCTTCATGTGGTATTTCTATAGAAAAACAAATGACCCAGGTTGATGGCCGCATCCTTGAAACCCCAAAGTTGAAGGTTGGTAA TAGTGAGGATTGTATCCCACGAAATGGGAGATGGAACTTTAACAATAAGACACTTTTAAACCCCACCAGCATCAGTAAGTGGGCCATTGTCAACTTTTCT GCTCGCTGTGATATTAGTCACGTCTCCCGTGAGCTTATCAACTGTGGAAGGAGAAAGGGCATTAATATTGAACGCCCACATACATTAATTGAAGAGGACC AACAATCTAGAAGAGGCAGCCCTCTTGCTAGAGTTGAAAGGATGTTTGAGCTGATCAGAGAGAAGCTTCCAGGGCCTCCTGAATTTATTCTTTGTGTATT GGCAGAGAGGAAAAACTCAGATATTTATGGACCGTGGAAGAAGACAAGTCTCAGTGATTTTGGCATTGTTACACAGTGCATATCCCCGACGAAGATTAAT GACCAGTATCTTACAAATGTGCTTCTTAAGATCAATTCTAAGCTAGGAGGAATAAATTCTCTGTTGGCAATTGAGCACTCCTCACATATTCCATTGATAA TGGATACTCCTACAATGATTCTGGGCATGGATGTCTCTCATGGCTCTCCAGGTCGATCAGACATGCCATCAGTGGCTGCGGTTGTTGGATCTCGATGTTG GCCACTGATTTCTAGGTACAGAGCATCTGTAAGAACGCAATCTCCTAAGGTGGAGATGATTGATGCTTTGTACAAGCCTTTAGCAAATGGGAATGATGAT GGTATAATAAGGGAACTGCTCGTGGATTTCTTTCAAACAAGCAAGGGGCACAAACCAAAACAAATTATTGTGTTCAGGGACGGTGTCAGCGAGTCACAAT TCAATCAGGTGCTGAACATTGAGCTGGAGCAAATTATCAAGGCCTATCAACATCTTGGTGAGGTTGACATACCGAAGTTCACAGTAATTGTGGCTCAGAA GAATCACCACACAAAGCTTTTTCAAGCTGGTGGTGGCACTGAAAATGTTCCTCCTGGGACAGTTGTTGACACAAAGATTGTTCATCCTAGAAACTATGAT TTCTACATGTGTGCTCATGCAGGCATGATTGGAACTTCAAGGCCAGCACACTATCATGTCTTGCTCGATGAGATTGGTTTCTCTCCAGATGAATTGCTAA ATCTTGTCCACTCTCTTTCATATGTGTATCAAAGGAGTACCACTGCTGTTTCGATTGTGGCTCCCATATGTTATGCTCACCTGGCTGCAGCACAGATAGG GCAGTTTATGAAGTTTGAGGATTTTTCTGAAACCTCTTCCGGACAGAGAAGCATGACATCAGTTGGAAGCACCCCTGTTCCAGAGCTCCCCAGGTTACAC GAAAATGTCGAGGGTTCAATGTTCTTCTGCTGA
AA sequence Show only first row Show all	>Potri.014G159400.1 pacid=42762433 polypeptide=Potri.014G159400.1.p locus=Potri.014G159400 ID=Potri.014G159400.1.v4.1 annot-version=v4.1 MEKISGGSPPPPPPPSVPANMNPELVEVPRHPERSAIPKYSMISRRGVGTSGRHISLLTNHFKVSVNVPDAVFYQYNVSITSEDNRAVESKGIGRKLIDR LYQTYSSEFAGKRFAYDGEKSLYTVGPLPQNKSEFTVVLEESFAKHESGSPGGGESPPAAVKRSKRSYRSKTFKVETSYAAKIPLKSIALALKGIEIDNS TQDALRVLDIILRQQAANRGCLLVRQSFFHDDSRNFNDVGGGVTGVKGFHSSFRTTQGGLSLNMDVSTTMILTPGPVIDFLIVNQNVREPRYVDWVKARR MLKNLRVKTKHNNMEFKIIGLSEKPCNQQYFPMKLKNRDGANVEAQIVEVTVYDYFTKHCGIQLGYSAYLPCLDVGKPKRPNYLPLELCSLISLQRYKKA LSSMQRASLVEKSRQKPQERIKTVTEAMRSYCYDEDPVLSSCGISIEKQMTQVDGRILETPKLKVGNSEDCIPRNGRWNFNNKTLLNPTSISKWAIVNFS ARCDISHVSRELINCGRRKGINIERPHTLIEEDQQSRRGSPLARVERMFELIREKLPGPPEFILCVLAERKNSDIYGPWKKTSLSDFGIVTQCISPTKIN DQYLTNVLLKINSKLGGINSLLAIEHSSHIPLIMDTPTMILGMDVSHGSPGRSDMPSVAAVVGSRCWPLISRYRASVRTQSPKVEMIDALYKPLANGNDD GIIRELLVDFFQTSKGHKPKQIIVFRDGVSESQFNQVLNIELEQIIKAYQHLGEVDIPKFTVIVAQKNHHTKLFQAGGGTENVPPGTVVDTKIVHPRNYD FYMCAHAGMIGTSRPAHYHVLLDEIGFSPDELLNLVHSLSYVYQRSTTAVSIVAPICYAHLAAAQIGQFMKFEDFSETSSGQRSMTSVGSTPVPELPRLH ENVEGSMFFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Potri.014G159400 [exp]	0	1	AGO902
AT3G14470			NB-ARC domain-containing disea...		Potri.018G003502 [exp]	1.00	0.9064
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.003G162801 [exp]	1.41	0.9031
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.012G043000 [exp]	2.82	0.8182	Pt-SKOR.2
					Potri.008G213600 [exp]	5.47	0.7894
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	6.00	0.7728
AT5G48920		TED7	tracheary element differentiat...		Potri.005G060700 [exp]	7.21	0.7712
AT1G15780			unknown protein		Potri.003G013300 [exp]	12.96	0.7421
AT1G28760			Uncharacterized conserved prot...		Potri.019G039300 [exp]	12.96	0.7215
AT1G72175			RING/U-box protein with domain...		Potri.019G078800 [exp]	14.83	0.7329
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Potri.002G148200 [exp]	15.55	0.7751

Compare expression of checked genes

Potri.014G159400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.