Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ZFN2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04990 312 / 7e-103 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT2G32930 291 / 4e-94 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT3G02830 260 / 7e-83 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 245 / 2e-77 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT2G47850 236 / 1e-72 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 236 / 2e-72 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 232 / 3e-71 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G48440 218 / 4e-66 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G63260 215 / 6e-65 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 184 / 2e-52 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223700 [exp] 760 / 0 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.013G086800 [exp] 295 / 8e-96 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 295 / 1e-95 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 248 / 1e-77 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 237 / 4e-73 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.015G089100 [exp] 226 / 1e-68 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 211 / 3e-63 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 180 / 6e-51 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.008G080300 [exp] 177 / 7e-50 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035330 [exp] 501 / 9e-176 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 496 / 8e-174 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 361 / 2e-121 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10026996 [exp] 285 / 4e-92 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10020196 [exp] 285 / 6e-92 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10031528 [exp] 236 / 2e-75 AT1G04990 204 / 2e-63 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10013476 [exp] 230 / 1e-70 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10033962 [exp] 229 / 1e-69 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10007941 [exp] 224 / 4e-68 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10002880 [exp] 222 / 5e-67 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.014G159500.2 pacid=42764574 polypeptide=Potri.014G159500.2.p locus=Potri.014G159500 ID=Potri.014G159500.2.v4.1 annot-version=v4.1 ATGCCAGACCACAACAACAGGCAGGTTAAGAGCAATGCTGTGTCAAATCAATCCGCTGAAAACATTGAAGAAGCAATTTGGCGATTGAAAATACATGATC ATCAAGAGCAAGGGGGTATGGCTCAATCAAGTCCATACCCAGATCGTCCTGGTGCACCAGATTGTGGATATTATTTAAGGACTGGATTATGTGGTTATGG AAGCAATTGTCGCTTTAATCATCCTGTTTATGCTGCACTGGGCGCGCAATTGAGAGAAGAACTTCCAGAGAGAGTTGGACAGCCTGACTGTGGGTATTAT TTGAAGACAGGGACTTGCAAATATGGATCTACTTGTAAATATCATCATCCAAGAGACAGGAATGGTGCAGGACCAGTTTCATTTAACGCGTTGGGTCTTC CTATGCGTCAGGATGAAAAATCATGTCCTTACTACATGCGGACCAGATCATGTAAATTTGGAGTTGCATGCAAATTCCACCACCCCCAGCCTGCGTCATT GGGAACTAGCTTCTCCCTAACTGGAGCTGCTGCCTTTGGATCTACGGGATCACCAATTGTGCCATCTTCAGGCCTGCCTTATGTAGGTGGACTTCCAACA TGGTCGTTACCAAGGGCACCACTTATGTCTGGCACAAATTTACAAGGTCCACAAGCTTATATGCCTGTTGTTGTATCTCCTTCTCCAGGCATCATTCCTG TCCCAGGCTGGAACACCTATGTGGGAAACTTGAATCCAATGTCCTCTTCCAGCATTCTGGGATCCAATCGTGCTTATGACTCCAGGAACCAAGGTGACTC TGGTTCCGGTGGGCAAGTGCACTTGTTATCAACAGTCAGCCCTATTCTCCCTGAGAGACCTGGTCAACCAGAATGCCGGCATTTTATGAGCACTGGGACC TGCAAATATGGTTCTGACTGCAAGTACCATCACCCAAAAGAAAGGATTGCACAGCTAGCAACCAATACTATGGGCCTGCTTGGACTTCCCTCGAGACCTG GGCAAGCCGTGTGTCCAGACTACAGTATGTATGGAATCTGCAAGTTCGGCCCAACCTGCAGATATGATCACCCCATACATACATATCCTTATAACTATAG CTTGAGCCTGCCATCTTTATCTATAATGGATTCATCTCTGATAACTTATCCAAGAATGGCACAAGCAGCTCCTGTTACCTTGTCGAAACTCCCTGATTTG ATCCACAATCCTGATGGTGCAAGCTACAATAAGCATCAGAATCCTGATACAAGTACAAAGATTTCAGATGATCCAACCGAGCAAGCTGGTTCCCCACCAC CACACTCTTCACAGGCTTCTTCAGAACCTTCACACGATTAA
AA sequence Show only first row Show all	>Potri.014G159500.2 pacid=42764574 polypeptide=Potri.014G159500.2.p locus=Potri.014G159500 ID=Potri.014G159500.2.v4.1 annot-version=v4.1 MPDHNNRQVKSNAVSNQSAENIEEAIWRLKIHDHQEQGGMAQSSPYPDRPGAPDCGYYLRTGLCGYGSNCRFNHPVYAALGAQLREELPERVGQPDCGYY LKTGTCKYGSTCKYHHPRDRNGAGPVSFNALGLPMRQDEKSCPYYMRTRSCKFGVACKFHHPQPASLGTSFSLTGAAAFGSTGSPIVPSSGLPYVGGLPT WSLPRAPLMSGTNLQGPQAYMPVVVSPSPGIIPVPGWNTYVGNLNPMSSSSILGSNRAYDSRNQGDSGSGGQVHLLSTVSPILPERPGQPECRHFMSTGT CKYGSDCKYHHPKERIAQLATNTMGLLGLPSRPGQAVCPDYSMYGICKFGPTCRYDHPIHTYPYNYSLSLPSLSIMDSSLITYPRMAQAAPVTLSKLPDL IHNPDGASYNKHQNPDTSTKISDDPTEQAGSPPPHSSQASSEPSHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.014G159500 [exp]	0	1	Pt-ZFN2.1
AT1G23040			hydroxyproline-rich glycoprote...		Potri.008G129100 [exp]	4.47	0.6849
AT5G54920			unknown protein		Potri.011G138600 [exp]	11.48	0.6814
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	19.44	0.6572
AT5G18610			Protein kinase superfamily pro...		Potri.008G046500 [exp]	32.93	0.6954	Pt-PNPK2.2
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076300 [exp]	39.87	0.6951
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.016G002800 [exp]	43.47	0.6254
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.008G156500 [exp]	52.04	0.6636
AT5G54920			unknown protein		Potri.001G423200 [exp]	106.14	0.6366
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.019G033300 [exp]	169.98	0.6289	TBP1.2,GTF902

Compare expression of checked genes

Potri.014G159500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.