Plant FIBer expression Database

Potri.014G160300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04560 555 / 0 AtLpxB lipid X B, transferases, transferring glycosyl groups (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029959
[exp]
592 / 0 AT2G04560 535 / 0.0 lipid X B, transferases, transferring glycosyl groups (.1)
Lus10035357
[exp]
528 / 0 AT2G04560 480 / 4e-168 lipid X B, transferases, transferring glycosyl groups (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF02684 LpxB Lipid-A-disaccharide synthetase
Representative CDS sequence
>Potri.014G160300.3 pacid=42763176 polypeptide=Potri.014G160300.3.p locus=Potri.014G160300 ID=Potri.014G160300.3.v4.1 annot-version=v4.1
ATGAACTCACTCCCTGTCTCTGCTTGGTTCTCGCCTTCAATTGACACTGATGCCCAATCGATGTTAAAAATGCTGTTAAGAACCATCAGAGATATAAAAA
ATGGGGGGGAAATGGGTTTCTCGAGCCTCCTTAGAAGATCTTTTTCTGTTCGGAGCAGAACTGTAGTAGACATGGGGGATAAAGATGGAGAACTGAGAGT
GTTCATAGTTGCTGGGGAGGTTTCAGGAGACTCTATTGCTTCTCGCCTTATGGCTTCTTTGAAGAAGCTCTCTCCTCTTCCCATTCGTTTTTCTGGCGTT
GGAGGGCCCAGGATGTCCAAGGAAGGATTGGAATCTTTGTTCCCTATGGAGGATATTTCAGTGATGGGGATGTGGGAATTGTTACCACATCTTAACAAGT
TTAGAGTAAGGTTGAAGGAAACAATTGAGGGTGCAATTTTGTTTCAGCCTCACGTTGTTGTGACTGTGGATTCCAAGGGGTTTTCTTTTCGTCTTCTAAA
GCAGTTGCGAGCTAGATATGGTTGGCAAGAATTGAATGGTCCTCTGCATTTTCATTATGTGGCGCCTTCGTTTTGGGCGTGGAAAGGGGGAGAAGCAAGG
CTCAAAGGCCTGGCTAATTTTGTGGATCACATCTTATGCATACTCCCTAATGAGGAAGCAGTTTGCAAGTTAAATGGATTAGATGCAACCTTTGTGGGCC
ATCCTGTCCTGGAAGACATTTTTGAATTTAATTTGGGAAAGCAAGCCTCACCACATGACCTTAAGATAGAAGGAAATTCTGAAGATTTCCGAAGGAAATA
TGCATTATCTTCAGGTGCTGCGGTCATTTCCTTGCTTCCTGGAAGCAGATTGCAAGAGGTCATTCGGATGCTTTCCATCTTTGCACACACTTTTGATCAG
TTAAAAGACTCCATTCCTGAATTAATTACCGTGATCCATGTGGCTCCTAATCAGCATGTGGAGAATTACATTGATGGAGTCATTCGTAAGTGGCCTGTGC
CTGCTATATTGATTCCTGGGGGACATCAACACCTGAAATATGATGCGTTCAGTGCCAGCAGGATTGCATTGTGTACTTCAGGAACAGTGGCGATGGAGTT
GCAGCTTGCACGCTTACCATGTGTCGTTGCCTATCGAGCCCATATCCTAACTGAATGGTACATTCAATATAAAGCAAAGATACCTTACATTTCTCTTCCC
AACATTCTCACAGATTCAGCTATAATCCCTGAGGCTCTCTTTCAAGCATGCACACCTACAAATCTAGCCTCATTGCTTATGAAACTAATGCATAACAAGA
GACTTCAAGAAGAACAGATTGTTGCTGCCGAAAATGTAATAAAACTTCTGTTTCCTTCAGAAAGAATTATAAACAACTTGGAAGAACAGATGGGATGGAA
ATTTCCAAATTGCACCCCAAGCGCACACTACGAAGAGAGAGATCATGGCTTCTTCCAAGCTTCAAATGTTATGGAACCAACCACCCCGCAGGACCTACAA
GTTTGTTTTCTTCTCTATTCCTAA
AA sequence
>Potri.014G160300.3 pacid=42763176 polypeptide=Potri.014G160300.3.p locus=Potri.014G160300 ID=Potri.014G160300.3.v4.1 annot-version=v4.1
MNSLPVSAWFSPSIDTDAQSMLKMLLRTIRDIKNGGEMGFSSLLRRSFSVRSRTVVDMGDKDGELRVFIVAGEVSGDSIASRLMASLKKLSPLPIRFSGV
GGPRMSKEGLESLFPMEDISVMGMWELLPHLNKFRVRLKETIEGAILFQPHVVVTVDSKGFSFRLLKQLRARYGWQELNGPLHFHYVAPSFWAWKGGEAR
LKGLANFVDHILCILPNEEAVCKLNGLDATFVGHPVLEDIFEFNLGKQASPHDLKIEGNSEDFRRKYALSSGAAVISLLPGSRLQEVIRMLSIFAHTFDQ
LKDSIPELITVIHVAPNQHVENYIDGVIRKWPVPAILIPGGHQHLKYDAFSASRIALCTSGTVAMELQLARLPCVVAYRAHILTEWYIQYKAKIPYISLP
NILTDSAIIPEALFQACTPTNLASLLMKLMHNKRLQEEQIVAAENVIKLLFPSERIINNLEEQMGWKFPNCTPSAHYEERDHGFFQASNVMEPTTPQDLQ
VCFLLYS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G04560 AtLpxB lipid X B, transferases, trans... Potri.014G160300
[exp]
0 1
AT5G04895 DEA(D/H)-box RNA helicase fami... Potri.010G246000
[exp]
3.16 0.7718
AT3G23940 dehydratase family (.1.2) Potri.003G176600
[exp]
8.48 0.7520
AT2G05120 Nucleoporin, Nup133/Nup155-lik... Potri.002G221300
[exp]
9.32 0.7546
Potri.003G157401
[exp]
11.74 0.6965
AT5G23690 Polynucleotide adenylyltransfe... Potri.015G104300
[exp]
13.41 0.7203
AT3G05340 Tetratricopeptide repeat (TPR)... Potri.013G021100
[exp]
13.60 0.7449
AT4G02120 CTP synthase family protein (.... Potri.014G123200
[exp]
17.88 0.7355
AT3G18310 unknown protein Potri.012G041300
[exp]
20.73 0.7293
AT1G56570 PGN PENTATRICOPEPTIDE REPEAT PROTE... Potri.013G006700
[exp]
20.78 0.7354
AT1G09800 Pseudouridine synthase family ... Potri.003G008500
[exp]
22.44 0.7054

Potri.014G160300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.