Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35690 441 / 1e-146 unknown protein AT1G55915 66 / 4e-11 zinc ion binding (.1) AT1G04850 45 / 0.0002 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) AT5G48690 44 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G092900 [exp] 63 / 4e-10 AT1G55915 429 / 5e-149 zinc ion binding (.1) Potri.008G009700 [exp] 62 / 6e-10 AT1G55915 314 / 2e-105 zinc ion binding (.1) Potri.002G244500 [exp] 52 / 7e-07 AT1G04850 311 / 1e-104 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1) Potri.008G133700 [exp] 49 / 1e-05 AT2G01650 497 / 4e-174 plant UBX domain-containing protein 2 (.1) Potri.001G316400 [exp] 43 / 0.0006 AT1G04850 581 / 0.0 ubiquitin-associated (UBA)/TS-N domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002262 [exp] 649 / 0 AT5G35690 585 / 0.0 unknown protein Lus10000922 [exp] 531 / 0 AT5G35690 575 / 0.0 unknown protein Lus10016607 [exp] 71 / 1e-12 AT1G55915 431 / 4e-150 zinc ion binding (.1) Lus10037337 [exp] 59 / 3e-09 AT1G55915 214 / 5e-68 zinc ion binding (.1) Lus10021798 [exp] 45 / 0.0001 AT2G01650 532 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10034612 [exp] 45 / 0.0002 AT2G01650 541 / 0.0 plant UBX domain-containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF08325 [poplar] [flax] WLM WLM domain CL0126 [poplar] [flax] PF09409 [poplar] [flax] PUB PUB domain
Representative CDS sequence Show only first row Show all	>Potri.014G160400.2 pacid=42764257 polypeptide=Potri.014G160400.2.p locus=Potri.014G160400 ID=Potri.014G160400.2.v4.1 annot-version=v4.1 ATGAACGTTTACAACCCTGAAAGAGAAAACCCACCACCTAACAACACACACCAAGAGCACAACACTAGAATGGCCGAGATTATGTTTAAAGTAACAGTTA TATGGAGGGGGAACAAATTTATTGTGGGAATGAACACCGATGCTTCTGTCAAGGATCTAGGGGATGAACTCCAGAAGTTGACAGATATCAAGGCAGATAC CATGAGACTTATTGTTCCGCGATTTTCTAACAAAAGCTCAAAGCTGCTGTTTCCTTTCTCAGATGAACACTCACAGCTAAGCTTGCAAGAAGCTTCCATT ATGGAGGGAAAGTTTATCAGAATGTTGGGAGTGTCTGAAGATGAAGTTGATAAAGTTCTACAAAATGCCAAGGTTGACCTGAGGATCGCCGGATTTGATG AAGAGGAAAAGAGAATGAGGCAGCGAATGTCAGATAGACCTCGTGGTTTGCTTAAACTCCCACAAGGACCTTATATCTTTTGTGATTTTCGCACACTTCA AATTCCTGGAGTTGAGCTGAACCCCCCCGCTCCAGAGGCTTTGAAAAGGATGCATATGCTTGCTGCGGATCCTGGAATTGTTGCTATAATGAACAAGCAT CGTTGGCGCATAGGAATTATGACTGAGATGGCCCCAGTTGGTTATGTTGGTGTGAGTCCCAAATGCATTCTTGGTTTCAATAAGAATCATGGAGAGGAGA TATCTCTCCGTCTTCGAACTGATGACCTCAAGGGTTTCAGGAAATATGAAAGCATCAAGAAAACTCTTCTGCATGAACTTGCTCACATGCTGTACTCAGA ACACGATGCGAACTTTTATGCTTTGGATAAACAGCTGAACCAAGAAGCTGCTAGTTTAGATTGGACTAAATCAAGGGGGCATACCTTGAGCGGAGTCAAT CATCAAGACCAGGACAGCGAAGACTTCTATGTTTCAGACAGTAGAAGCTCTTCTGTGAAGCTCGGGGGAAACGTGTCTAATCAACTGGCTAGTGCCCGCG CATCTTCTGTGGCTGCTGCTTATCACCGTTTAGCAGATGCCTCTTCCAACAGTTTGGGAGCCTCTGAAGTACATGAAGAACCCGACCCGGATGATTCAAT TTTTAACATGCATAAAGAACCTGGTGCCAAGGGTCAGGTAGAAAAAGGAAAGGTAGATATTGAAAATCAACATAAATCTCAATGGAAACCTCACCATCAA CCTGATCCTGATGAACATCCTTTTAATCAAAACAAGAATGAACCTGATCCTGATGATTCTCAAGGTAATCACCATGAGGTGATGGACATCCTGAATGGTG GGATTCGCCCTGACAAAACCATTGATGAACCTGATCCTGATGATTCTCAAGGTAATCACCATGAGGTGATGGACATCGTGAATGGTGGGATTTGCCCTGC CAAAACCATTGATGAACCTGATCCTGATGATTCTCAAGGCAATCACCATGAGGCGATGGACATCCTGAATATTGGGATTTGCCCTGCCAAAACCATTGAC GAACCTGATCCTGATGATTCTCAAGGCAATCACCATGAGGTGATGGACACCCTGAATGGTGGGATTCGCGCTGACAAAACCTTTGACGAACCTGATCCTG ATGATTGTCTAGTAACTGAAAACATTGAAGACCATCTCCATCTAAAAAAAGCTTATAAAGAACCTGATCCTGATGAATCTGAAACAAATCAGGTTGTTCA GGCTGAGCCCGATCCTGATGATGATTTAGCAGCGTCAGATGAAGTATCTAGGATGCAAATTGATGAACCAGATCCAGATGATGAAGAACTACGGAGAATC CAAGATCCTGTTAGTGTTGTCTGCAGCCGCCTTCAGAAGGCTACTGAGACACTGAGAGCTGAATTGAACTCCACAGAAGCAGCGGCAGCTTTGCAAACTC TTTTTAAGATAATTAGGAATGTGATCGAACACCCAGATCAGTCAAAATTCAAAAGACTCAGAAAGGCTAATCCCATAATCCAGAAAAATGTTGCCAGTCA CCAAGCTGCGGTGGAAATTGTTCATGTGGTTGGATTCAGTGAGGAAGTTAGTTATGATGAAACTGGGAAGGCTGATACTTACTTGGTGCTGAAGCGGAAT GATCCAGGCTTGTTGTGGCTTGCCAAGTCAACCCTTGAAGCATGCATGGCCTAG
AA sequence Show only first row Show all	>Potri.014G160400.2 pacid=42764257 polypeptide=Potri.014G160400.2.p locus=Potri.014G160400 ID=Potri.014G160400.2.v4.1 annot-version=v4.1 MNVYNPERENPPPNNTHQEHNTRMAEIMFKVTVIWRGNKFIVGMNTDASVKDLGDELQKLTDIKADTMRLIVPRFSNKSSKLLFPFSDEHSQLSLQEASI MEGKFIRMLGVSEDEVDKVLQNAKVDLRIAGFDEEEKRMRQRMSDRPRGLLKLPQGPYIFCDFRTLQIPGVELNPPAPEALKRMHMLAADPGIVAIMNKH RWRIGIMTEMAPVGYVGVSPKCILGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMLYSEHDANFYALDKQLNQEAASLDWTKSRGHTLSGVN HQDQDSEDFYVSDSRSSSVKLGGNVSNQLASARASSVAAAYHRLADASSNSLGASEVHEEPDPDDSIFNMHKEPGAKGQVEKGKVDIENQHKSQWKPHHQ PDPDEHPFNQNKNEPDPDDSQGNHHEVMDILNGGIRPDKTIDEPDPDDSQGNHHEVMDIVNGGICPAKTIDEPDPDDSQGNHHEAMDILNIGICPAKTID EPDPDDSQGNHHEVMDTLNGGIRADKTFDEPDPDDCLVTENIEDHLHLKKAYKEPDPDESETNQVVQAEPDPDDDLAASDEVSRMQIDEPDPDDEELRRI QDPVSVVCSRLQKATETLRAELNSTEAAAALQTLFKIIRNVIEHPDQSKFKRLRKANPIIQKNVASHQAAVEIVHVVGFSEEVSYDETGKADTYLVLKRN DPGLLWLAKSTLEACMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35690			unknown protein		Potri.014G160400 [exp]	0	1
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.016G029300 [exp]	3.16	0.8499	RHC1.1
AT2G15695			Protein of unknown function DU...		Potri.004G142000 [exp]	3.74	0.8654
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.018G090800 [exp]	6.08	0.9055
AT2G42040			unknown protein		Potri.006G193300 [exp]	14.89	0.8494
AT1G52540			Protein kinase superfamily pro...		Potri.001G204000 [exp]	18.46	0.8422
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Potri.009G088100 [exp]	18.76	0.8150
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.004G199600 [exp]	24.26	0.8315	Pt-NIT2.2
AT5G64610		HAM1	histone acetyltransferase of t...		Potri.005G171700 [exp]	25.45	0.8261
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.011G170000 [exp]	34.64	0.8222	Pt-PEX5.1
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G162500 [exp]	38.34	0.8486

Compare expression of checked genes

Potri.014G160400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.