Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-IBR5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04550 333 / 5e-116 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT3G23610 86 / 5e-20 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 76 / 9e-17 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G55270 66 / 7e-12 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT5G23720 53 / 1e-07 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G033000 [exp] 83 / 2e-19 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.010G210900 [exp] 67 / 2e-12 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 67 / 2e-12 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.015G105000 [exp] 54 / 4e-08 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.012G105800 [exp] 50 / 1e-06 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.006G040300 [exp] 49 / 2e-06 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 47 / 8e-06 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.016G110700 [exp] 45 / 4e-05 AT3G09100 914 / 0.0 mRNA capping enzyme family protein (.1.2) Potri.006G096000 [exp] 44 / 0.0001 AT3G09100 948 / 0.0 mRNA capping enzyme family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002263 [exp] 409 / 2e-145 AT2G04550 327 / 1e-113 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Lus10000921 [exp] 404 / 1e-143 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Lus10021940 [exp] 89 / 3e-21 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 81 / 5e-18 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 64 / 1e-12 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10003291 [exp] 68 / 2e-12 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10006229 [exp] 66 / 7e-12 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10030324 [exp] 66 / 1e-11 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10036877 [exp] 65 / 1e-11 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10032545 [exp] 61 / 3e-10 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [poplar] [flax] Phosphatase PF00782 [poplar] [flax] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.014G160500.1 pacid=42762641 polypeptide=Potri.014G160500.1.p locus=Potri.014G160500 ID=Potri.014G160500.1.v4.1 annot-version=v4.1 ATGATGATGATGAGGAAGAGGGAGAGAGAAAACCCGTGCGGGGTATGCGGTCACTACCACAAGTACGAAGAGGGTGAGGTTTGCGGGATTTGCGGCCACC GTATGCCTGAATCCACCGCCGATAAGTCTCCCTCTGTTCACCTCAGCGCCTTTCCTTCTCAGATCCTCCCCGACTTCCTTTTCTTAGGCAGCTACGACAA CGCCTCTCGATCCGAGCTCCTCAAAACCCAAGGAATTACTCGTGTGCTCAATACAGTTCCTGCGTGTCAAAATCTCTACAAGAATTCATTCACCTATCAC TGCCTCCAAGATGACAAGATCTTACAATTTGACGATGCCATACAGTTTTTAGAGCAATGTGAGAGGGACAAGGCTCGCGTTCTTGTCCATTGCATGTCAG GAAAAAATAGGTCTCCAGCTATTGTAATGGCTTACTTGATGAAGTCCAGAGGATGGAGACTTGCTCAATGTTACCAGTGGGTGAAAGAGCGGAGACCATC CGTTGATCTAACTCAAGCCGTGCACCAGCAGTTGCATGAGTATGAACAGAAGCTTTTCGGGTCAAATGATAATAGCAACCCTGCCCTGCCAGTCTTCCTT CCTGTAGGTGCGCCATCTTTTAGCTTTGGCTTCCCAAAGGCTAATGATCCAGTTCCTGTCCAAGCATTCATTGGTGTTGGTGCTCCCTCTATTTTCACAC GTCCTCTAGAAGTTCCTCCACAAGAGTTCCAGTTTGGAGCTGGTCATCCCCAGAACATATCAGAAAGCTCCCTTGGCACCAATTTGCCGAACCCGAATGG TGGGGATGTTTCAATGGATTCATGA
AA sequence Show only first row Show all	>Potri.014G160500.1 pacid=42762641 polypeptide=Potri.014G160500.1.p locus=Potri.014G160500 ID=Potri.014G160500.1.v4.1 annot-version=v4.1 MMMMRKRERENPCGVCGHYHKYEEGEVCGICGHRMPESTADKSPSVHLSAFPSQILPDFLFLGSYDNASRSELLKTQGITRVLNTVPACQNLYKNSFTYH CLQDDKILQFDDAIQFLEQCERDKARVLVHCMSGKNRSPAIVMAYLMKSRGWRLAQCYQWVKERRPSVDLTQAVHQQLHEYEQKLFGSNDNSNPALPVFL PVGAPSFSFGFPKANDPVPVQAFIGVGAPSIFTRPLEVPPQEFQFGAGHPQNISESSLGTNLPNPNGGDVSMDS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Potri.014G160500 [exp]	0	1	Pt-IBR5.1
AT2G31130			unknown protein		Potri.013G118000 [exp]	1.73	0.8731
AT4G29790			unknown protein		Potri.006G146700 [exp]	2.00	0.8818
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	2.82	0.8783
AT4G32020			unknown protein		Potri.018G022400 [exp]	3.31	0.8393
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	4.47	0.8722
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G327100 [exp]	4.47	0.8460	TCP20.1
AT1G52343			unknown protein		Potri.003G055200 [exp]	4.89	0.8730
AT1G12450			SNARE associated Golgi protein...		Potri.003G117400 [exp]	6.70	0.8285
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.009G170100 [exp]	7.00	0.8636
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Potri.007G014200 [exp]	8.00	0.8275	HON905,HIS1.1

Compare expression of checked genes

Potri.014G160500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.