Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04530 528 / 0 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT1G74700 348 / 4e-120 NUZ, TRZ1 tRNAse Z1 (.1) AT2G01730 42 / 0.0005 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064400 [exp] 349 / 3e-120 AT1G74700 462 / 4e-166 tRNAse Z1 (.1) Potri.010G106200 [exp] 45 / 9e-05 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014623 [exp] 547 / 0 AT2G04530 543 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10033809 [exp] 543 / 0 AT2G04530 540 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10023618 [exp] 334 / 5e-114 AT1G74700 437 / 3e-156 tRNAse Z1 (.1) Lus10024249 [exp] 331 / 9e-113 AT1G74700 433 / 1e-154 tRNAse Z1 (.1) Lus10037338 [exp] 45 / 9e-05 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10035763 [exp] 45 / 9e-05 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF12706 [poplar] [flax] Lactamase_B_2 Beta-lactamase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.014G160600.1 pacid=42764682 polypeptide=Potri.014G160600.1.p locus=Potri.014G160600 ID=Potri.014G160600.1.v4.1 annot-version=v4.1 ATGCAAATCTCTATCCCTTTATTCTCTTCACCTCCCAATCCTAAAATCCCATCACTTTTCCCTTTTCAGCACCTCCCCAGTATTTTCCATGGAAAAGGAA AACCTACAACATTAACAACCCGTAATTTTCATTTCCTCCCTCTCAAAATTAAAAACAAGCCCTTCATCGTCAAAGCCTCCAGCTTTTTATCAGAAATCGG GCGTGCTATTGAGGAAGAAGAAGACTACAGAAAGGCCCGTGCTGCTGTTATCCGTAAAGGAATTGACTTGGGAGGGTATGCAATTGAGGGTCTGTCCATT GGAGGCCAAGAGACTTGTATAATTATACCAGAGTTTAAGTGTGCTTTTGATATTGGGAGGTGCCCCACCAGAGCTATTCACCAGAATTTTGTCTTCATCA CTCATGCCCATCTTGATCACATTGGTGGGCTGCCAATGTATGTGGCTAGTCGTGGTTTGTACAGCTTAAAGCCTCCAACAATATTTGTTCCTCCGTGTAT CAAAGACGATGTTGAGAAACTATTTGACATTCACAGGGCAATGGGGCAAGTAGAGCTTAATTTTGATTTGGTTGCATTGGATGTGGGTGAAACATATGAA TTGCGGAATGATGTTGTGGTCCGACCATTCAGAACTCAACATGTTATACCCAGTCAGGGTTATGTCATCTATTCGGTGAGGAAAAAATTGAAGAAACAAT ACATTCATCTCAAAGGAAAACAAATAGAGAAATTGAAGAAGTCTGGTGTTGAGATTACAGACATAATATTGTCCCCTGAGGTGGCCTTTACTGGAGATAC CACAGCAGAGTACATGCTTGATCCGCGTAATGCAGATGCGTTGAGGGCAAAAGTTCTAATAACTGAGGCAACTTTCCTGGATGAAGATTTTACCACTGAG CATGCACGACAGCGTGGTCATACCCATTTGTTTGAGATTATTGAAAATGCCAAATGGATCCGGAGTAAAGCAATCTTGTTGACTCATTTCTCCTCCCGCT ACAGTATAGAGGACATACGTGAAGCTGTGTCGAAGTTGCAATCCAGGGTGTCAGCAAAAGTAGTTCCTCTGACAGAAGGTTTCAAATCAATGTACTCATA G
AA sequence Show only first row Show all	>Potri.014G160600.1 pacid=42764682 polypeptide=Potri.014G160600.1.p locus=Potri.014G160600 ID=Potri.014G160600.1.v4.1 annot-version=v4.1 MQISIPLFSSPPNPKIPSLFPFQHLPSIFHGKGKPTTLTTRNFHFLPLKIKNKPFIVKASSFLSEIGRAIEEEEDYRKARAAVIRKGIDLGGYAIEGLSI GGQETCIIIPEFKCAFDIGRCPTRAIHQNFVFITHAHLDHIGGLPMYVASRGLYSLKPPTIFVPPCIKDDVEKLFDIHRAMGQVELNFDLVALDVGETYE LRNDVVVRPFRTQHVIPSQGYVIYSVRKKLKKQYIHLKGKQIEKLKKSGVEITDIILSPEVAFTGDTTAEYMLDPRNADALRAKVLITEATFLDEDFTTE HARQRGHTHLFEIIENAKWIRSKAILLTHFSSRYSIEDIREAVSKLQSRVSAKVVPLTEGFKSMYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Potri.014G160600 [exp]	0	1
AT2G22360			DNAJ heat shock family protein...		Potri.005G073900 [exp]	1.00	0.9870
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Potri.017G007300 [exp]	1.41	0.9869
AT2G31040			ATP synthase protein I -relate...		Potri.014G142200 [exp]	2.23	0.9826
AT5G11480			P-loop containing nucleoside t...		Potri.006G243200 [exp]	2.82	0.9841
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	3.87	0.9859
AT3G20230			Ribosomal L18p/L5e family prot...		Potri.013G108700 [exp]	4.24	0.9809
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Potri.008G101900 [exp]	4.47	0.9768	Pt-RFC3.1
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	6.32	0.9707	NAP6.2
AT2G44870			unknown protein		Potri.004G030100 [exp]	6.32	0.9797
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	6.63	0.9761

Compare expression of checked genes

Potri.014G160600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.