Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04970 615 / 0 lipid-binding serum glycoprotein family protein (.1.2) AT3G20270 357 / 2e-118 lipid-binding serum glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358800 [exp] 491 / 2e-171 AT1G04970 494 / 1e-172 lipid-binding serum glycoprotein family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014625 [exp] 639 / 0 AT1G04970 595 / 0.0 lipid-binding serum glycoprotein family protein (.1.2) Lus10033808 [exp] 638 / 0 AT1G04970 601 / 0.0 lipid-binding serum glycoprotein family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0648 [poplar] [flax] Aha1_BPI PF01273 [poplar] [flax] LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain CL0648 [poplar] [flax] Aha1_BPI PF02886 [poplar] [flax] LBP_BPI_CETP_C LBP / BPI / CETP family, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G160700.1 pacid=42764353 polypeptide=Potri.014G160700.1.p locus=Potri.014G160700 ID=Potri.014G160700.1.v4.1 annot-version=v4.1 ATGGCACAAACCCTTCCCCTCTTTCTCCTAATAATTTGTCTCTTGCTAATTCCCTCCTCACAAATCCAACAAGAACAAGAAGCCTTCACTACTATAGTCA TATCCCAACAAGGCCTTGATTTCCTCAAGAATTTGCTCATAACTCAAGCTATCTCTTCAATCATCCCTCTCAAACTTCCCAACATTACTAAAACTGCTAA ATTCCCTTTTTTGGGCTATGTCCATATGCTACTCTCCAACATCACCATCTACCAACTCCAAGTATTGGATTCTTATGTCAAGCCTGGTGATACTGGCATT GCAATTATTGCTTCTGGGACCACTTGCAATTTGAGTATGGATTGGTCTTATGAATATAATACTTGGCTTTTTCCTGTGGAGATTTCTGATAAAGGCCATG CTTCTGTTCAGGTTGAAGGCATGGAAGTGGGGCTCACATTAGGCCTGAAGAACCAGGAGGGAACTCTGAAGCTCTCCCTTATGGACTGTGGCTGTTATGT TAAAGATATATCTATAAAATTGGATGGAGGAGCATCTTGGCTCTATCAAGGGATGATAGATGCATTTGAAGAGCAAATAGGGTCTGCAGTGGAAAATGCT ATTACCAAGAATCTTGGAGAAGGAATTTTAAAGCTTGATTTGTTTCTGCAATCTCTTCCGAAAGAAATTCCTGTAGATGATGATGCTTCAATAAATGTAA CTTTTGTGGACAACCCTTCACTGAGTAATTCTTCTGTTGGGTTTGACATCAACGGGTTATTCACAGCAAGGAAAAAGGTTCCAATCACCATGTATTACTA TGAAAATACACTGCCTTCAGTTTTGTGCACTGAACCAACTAAAATGCTTGGAATTTCTCTGGATGAGGCTGTTTTCAATTCTGCTTCAGCCTTATATTAT GATGCAAAATTTATGCAATGGATTGTGGATAAAATACCAGATCAGTCTCTTCTAAACACCGCTGGATGGAGATTTATTGTTCCTCAATTGTACAAGAAAT ACCCAAATGATGACATGAATATGAATCTCTCTTTGTCATCTCCTCCTATCTTAAGGATTTCTGAACACAATCTCGATGCAACGGTTTACGCAGACTTGAT AATTGATGTATTGGAAGCAGACCAAGTAATACCAGTTGCATGCATTTCACTGGTGATTCGCGGATCAGGTTCAGTTGGAATTGCAGGCAACAACCTTGTT GGCAGCGTGAAATTGAATGACTTTTCCATGTCATCGAAGTGGAGCAATATTGGCAATCTTCGGATGTATCTTATTCAGCCACTTATGTGGACACTTATCC AAACTGTTTTCGTGCCGCATGCAAATGCGCATTTAGCAAAAGGTTTCCCCTTGCCCATCATTCATGGTTTCACTGTTCAGAATGCTGAAATTATCTTCTC AACATCAAAAATTACAGTTTGTGGCGATGTGGCGTTCAGAGAGTCCTTGAGTATCAAGCAGGCTTCTGGGCCTCTCTAG
AA sequence Show only first row Show all	>Potri.014G160700.1 pacid=42764353 polypeptide=Potri.014G160700.1.p locus=Potri.014G160700 ID=Potri.014G160700.1.v4.1 annot-version=v4.1 MAQTLPLFLLIICLLLIPSSQIQQEQEAFTTIVISQQGLDFLKNLLITQAISSIIPLKLPNITKTAKFPFLGYVHMLLSNITIYQLQVLDSYVKPGDTGI AIIASGTTCNLSMDWSYEYNTWLFPVEISDKGHASVQVEGMEVGLTLGLKNQEGTLKLSLMDCGCYVKDISIKLDGGASWLYQGMIDAFEEQIGSAVENA ITKNLGEGILKLDLFLQSLPKEIPVDDDASINVTFVDNPSLSNSSVGFDINGLFTARKKVPITMYYYENTLPSVLCTEPTKMLGISLDEAVFNSASALYY DAKFMQWIVDKIPDQSLLNTAGWRFIVPQLYKKYPNDDMNMNLSLSSPPILRISEHNLDATVYADLIIDVLEADQVIPVACISLVIRGSGSVGIAGNNLV GSVKLNDFSMSSKWSNIGNLRMYLIQPLMWTLIQTVFVPHANAHLAKGFPLPIIHGFTVQNAEIIFSTSKITVCGDVAFRESLSIKQASGPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04970			lipid-binding serum glycoprote...		Potri.014G160700 [exp]	0	1
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	10.00	0.8007
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Potri.001G305500 [exp]	15.16	0.6348
AT1G17430			alpha/beta-Hydrolases superfam...		Potri.001G168600 [exp]	16.97	0.7904
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	17.88	0.7951	COMTL3,Pt-GSI.2
AT3G25280			Major facilitator superfamily ...		Potri.002G249100 [exp]	18.02	0.7938
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.016G111800 [exp]	18.11	0.7844
AT3G15518			unknown protein		Potri.001G404500 [exp]	18.70	0.7877
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Potri.006G052700 [exp]	19.44	0.7968
AT5G20260			Exostosin family protein (.1)		Potri.006G064850 [exp]	24.49	0.7463
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	26.15	0.7806

Compare expression of checked genes

Potri.014G160700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.