Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04960 309 / 6e-105 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G27000 176 / 6e-53 Protein of unknown function (DUF1664) (.1) AT2G02730 155 / 2e-45 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 81 / 6e-17 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) AT1G24267 66 / 4e-12 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G219300 [exp] 493 / 2e-177 AT1G04960 325 / 7e-111 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.010G092700 [exp] 184 / 7e-56 AT1G27000 331 / 1e-113 Protein of unknown function (DUF1664) (.1) Potri.008G149000 [exp] 180 / 2e-54 AT1G27000 327 / 3e-112 Protein of unknown function (DUF1664) (.1) Potri.003G169200 [exp] 95 / 4e-22 AT1G24267 214 / 5e-67 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.001G058700 [exp] 93 / 2e-21 AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014626 [exp] 322 / 1e-109 AT1G04960 318 / 3e-108 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10033807 [exp] 203 / 2e-64 AT1G04960 218 / 2e-70 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Lus10013269 [exp] 149 / 7e-43 AT1G27000 254 / 8e-84 Protein of unknown function (DUF1664) (.1) Lus10036718 [exp] 147 / 1e-41 AT1G27000 272 / 1e-90 Protein of unknown function (DUF1664) (.1) Lus10037210 [exp] 126 / 3e-33 AT1G27000 252 / 8e-82 Protein of unknown function (DUF1664) (.1) Lus10030793 [exp] 123 / 7e-31 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1) Lus10011347 [exp] 72 / 4e-14 AT1G24265 226 / 2e-71 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3) Lus10003127 [exp] 71 / 8e-14 AT1G24265 202 / 6e-63 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07889 [poplar] [flax] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Potri.014G160800.2 pacid=42762395 polypeptide=Potri.014G160800.2.p locus=Potri.014G160800 ID=Potri.014G160800.2.v4.1 annot-version=v4.1 ATGGCTTTGCAGACTGGGGTCTCTACCTCCAAAGTTCTCATTCTCGTCGGTGCAGGTTTGACCAGTTCGATTATTTTGAAAAATGGACGATTGCCTGAAC TCATTGGGCAGCTTCAAGAATTACTCAAGGGTGTTGACGAAGTCGAGATCGCTCCTTACAAATACGACACCGCTCTTCTTGCTGCTCAGATTCGTCAATT GGCGCAAGAGATTAAGGAGTTGAGCTTATCTAGTCCTGTAACCATCTATAATGGAAATTCTGTTTCTAATGGGAATTTTTCTTCTTACCTAGTGCCAGCT GCTGCACTTGGAGCAATGGGATATTGTTACTTTTGGTGGAAGGGCTGGTCATTTTCAGATGTAATGTTTGTAACAAAGCAAAATATGGCAAATGCTGTTG CAACCGTGTCAAAACAATTGGAGAATGTATCTGAAACGTTAGCTTCAACAAAAAGACATCTGACAAAAAGGCTGGGAAATTTGGACTGGAAGATTGAGGA GCAGATTGAAACATCTAAGCTCATTGCCAATGATATAGATGAGATGAAATCAAATCTTTCCCAAATTGGATATGATGTTGAATCAATCCATGAAATGATA TCCGGGCTGGAAGGGAAGCTTGAACTTCTTGAAAGCAAACAGGATGCAACAAACTCTGGTCTATGGTATCTATGTCAATTTGCTGGAGGCTTTAAAGATG GACCCGGCACTAAAGCTTATCAGGATGTTGGTGCTAAGCTAGCAAACCATTCAGCTATGGCATATGAAGAAAGGTCTCTAAAGGGTCTTCAATTTATTGC TGAAACTAAAGAGTCTGTTGAGAAACCAGTAGAAAATGCGAAGAAAAATGATCTTGATACCTTCCCTGGTGAAAAAGCAAGAACTTTGAAAATACACAGG TCATATCCAGGTGGGTTTTCTTTGACCCGAGACATCTTGGGTTCTGGCATATAA
AA sequence Show only first row Show all	>Potri.014G160800.2 pacid=42762395 polypeptide=Potri.014G160800.2.p locus=Potri.014G160800 ID=Potri.014G160800.2.v4.1 annot-version=v4.1 MALQTGVSTSKVLILVGAGLTSSIILKNGRLPELIGQLQELLKGVDEVEIAPYKYDTALLAAQIRQLAQEIKELSLSSPVTIYNGNSVSNGNFSSYLVPA AALGAMGYCYFWWKGWSFSDVMFVTKQNMANAVATVSKQLENVSETLASTKRHLTKRLGNLDWKIEEQIETSKLIANDIDEMKSNLSQIGYDVESIHEMI SGLEGKLELLESKQDATNSGLWYLCQFAGGFKDGPGTKAYQDVGAKLANHSAMAYEERSLKGLQFIAETKESVEKPVENAKKNDLDTFPGEKARTLKIHR SYPGGFSLTRDILGSGI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04960			Protein of unknown function (D...		Potri.014G160800 [exp]	0	1
AT1G78895			Reticulon family protein (.1)		Potri.008G004200 [exp]	1.00	0.9241
AT2G38450			unknown protein		Potri.008G075000 [exp]	2.00	0.9103
AT5G49710			unknown protein		Potri.005G157500 [exp]	3.60	0.8762
					Potri.005G172250 [exp]	12.24	0.8913
AT3G10915			Reticulon family protein (.1.2...		Potri.019G057400 [exp]	12.72	0.7930
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Potri.010G129600 [exp]	15.29	0.8896
AT4G15563			unknown protein		Potri.008G204800 [exp]	15.49	0.8553
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.006G194100 [exp]	15.96	0.7912	SINAT2.2
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.014G159100 [exp]	16.12	0.8577
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Potri.008G133900 [exp]	21.81	0.8500

Compare expression of checked genes

Potri.014G160800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.