Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35670 271 / 2e-87 IQD33 IQ-domain 33 (.1) AT3G09710 76 / 6e-15 IQD1 IQ-domain 1 (.1.2) AT3G52290 74 / 3e-14 IQD3 IQ-domain 3 (.1) AT5G03040 70 / 7e-13 IQD2 IQ-domain 2 (.1.2.3) AT3G15050 67 / 2e-12 IQD10 IQ-domain 10 (.1) AT2G26410 58 / 4e-09 IQD4 IQ-domain 4 (.1) AT3G59690 58 / 6e-09 IQD13 IQ-domain 13 (.1) AT2G26180 56 / 2e-08 IQD6 IQ-domain 6 (.1) AT2G33990 55 / 3e-08 IQD9 IQ-domain 9 (.1) AT4G10640 55 / 5e-08 IQD16 IQ-domain 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G086300 [exp] 75 / 1e-14 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 71 / 5e-13 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 70 / 7e-13 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.001G215200 [exp] 64 / 6e-11 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.006G226600 [exp] 63 / 9e-11 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.003G042700 [exp] 58 / 4e-09 AT1G72670 223 / 3e-68 IQ-domain 8 (.1) Potri.009G015800 [exp] 58 / 6e-09 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.001G375700 [exp] 54 / 8e-08 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.019G095700 [exp] 54 / 1e-07 AT3G59690 433 / 2e-147 IQ-domain 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000919 [exp] 294 / 2e-97 AT5G35670 173 / 7e-50 IQ-domain 33 (.1) Lus10002265 [exp] 265 / 1e-85 AT5G35670 186 / 9e-55 IQ-domain 33 (.1) Lus10026486 [exp] 80 / 4e-16 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 77 / 3e-15 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 76 / 1e-14 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 74 / 2e-14 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 61 / 8e-10 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10013522 [exp] 58 / 7e-09 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10015067 [exp] 55 / 3e-08 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3) Lus10015300 [exp] 53 / 2e-07 AT2G33990 242 / 3e-79 IQ-domain 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G161000.2 pacid=42764318 polypeptide=Potri.014G161000.2.p locus=Potri.014G161000 ID=Potri.014G161000.2.v4.1 annot-version=v4.1 ATGGGCATCACCGGAGAGCTGGTTAGGAGTGTCTTCTCCAGAAACCGCTCCGATGGAACTCATGAGAGCAATGCAAGAATCACTCCAGGGGATCACAGGA AAAGGTGGAGTTCTGTTAGGCTATACCTTTGTGGTGAAGAGCTTAATTCAGTGCTTGCAGAGGAGGATTCAGCTTCAGTCAAGAGCTCTGAGGCCACTGT TACACAGCCCATGCTAGAAGACACTGAAGACAAAGGAGATGTCCAAAATGAAGAGACCAAAGAAGATATGCCGAAGGAAAAGCATAATTCAACTTCCAAA TTATTCCGTCAAGAAGATGCAGCGATCATCATTCAGTCCGCGTTCAGAGACTTTCTGGCTAGGCATAAAAGAGAAGAGACCACGTCAAAGGAGGATGGGC AGGAACTTGCTCTGGGAACAGAAAGTCCAAGTAGAGATTCACTAGGCACATCAATTGAAGTTCAGACTGGAAATTCTGTGGAAGTTCTTTCTGTTAGAGA GGAAAATGAGTCTGTGCATCATCGAGTGCAAAAGAGAGCCAGAACTCAGGTTTTCAGGCTAAAGGAAGATTGGGATGATAGCACGGTGATTAGCAACATT TCGAAAAAGAGGATTCAGAGCAGACTGGAAGCAACAAACAGGCGAGAAAGGGCACTGGCATATGCTTTCTCACAACAGTTACGAATCTGCTCGAAGAAGA AACAGACTAAATCTGATGGCACCCAACCCAACATGAGTTGGAGCTGGCTAGAAAGGTGGATGGCAACAAGAGTTCCAGAATGCTCAGTGGAAAGCTGTAC TGGCAAACAACTTGAGCCAGTAAACAACAATTACAGATTTGATTTCGGGGAGAGATTTTCTGATGTGGCAGTAGAAGAGAAAGAGAGTTGCGGGTCTAAT GAGGTATCTGTCCAATTTGATAGCTTATCAATAGCATCAAACAACAAGGATGGCTTCAAGCACACTAAGAGTAGGCTTAAGGCTACCAGAACCATATCAA GGCGGAAAACAGCCCCAAGCTACCAGTGTCCGACAGAGCAAGCTAAGGTAATCAAGAAAGGGTGTTCAAAGGAGACTGAACAAGACAAGGAGCAGAAACC GAAACCACCATCAAGTGGCGGAAAAGAAATGAAACGCAGTGCTTCATCTTAA
AA sequence Show only first row Show all	>Potri.014G161000.2 pacid=42764318 polypeptide=Potri.014G161000.2.p locus=Potri.014G161000 ID=Potri.014G161000.2.v4.1 annot-version=v4.1 MGITGELVRSVFSRNRSDGTHESNARITPGDHRKRWSSVRLYLCGEELNSVLAEEDSASVKSSEATVTQPMLEDTEDKGDVQNEETKEDMPKEKHNSTSK LFRQEDAAIIIQSAFRDFLARHKREETTSKEDGQELALGTESPSRDSLGTSIEVQTGNSVEVLSVREENESVHHRVQKRARTQVFRLKEDWDDSTVISNI SKKRIQSRLEATNRRERALAYAFSQQLRICSKKKQTKSDGTQPNMSWSWLERWMATRVPECSVESCTGKQLEPVNNNYRFDFGERFSDVAVEEKESCGSN EVSVQFDSLSIASNNKDGFKHTKSRLKATRTISRRKTAPSYQCPTEQAKVIKKGCSKETEQDKEQKPKPPSSGGKEMKRSASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35670		IQD33	IQ-domain 33 (.1)		Potri.014G161000 [exp]	0	1
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Potri.009G161700 [exp]	1.00	0.8848
AT4G25240		SKS1	SKU5 similar 1 (.1)		Potri.015G127200 [exp]	2.44	0.8441	SKS1.3
AT5G18840			Major facilitator superfamily ...		Potri.010G026500 [exp]	5.29	0.8258
AT5G08350			GRAM domain-containing protein...		Potri.005G088200 [exp]	6.00	0.8543
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	6.63	0.8770
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.001G442800 [exp]	6.70	0.7904
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	8.66	0.8575
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G189900 [exp]	8.77	0.8309
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.010G052400 [exp]	13.41	0.8195
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142400 [exp]	16.91	0.8270

Compare expression of checked genes

Potri.014G161000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.