Plant FIBer expression Database

Pt-TAFII59.1 (Potri.014G161100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-TAFII59.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04950 639 / 0 EMB2781, ATTAF6, TAF6, TAFII59 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
AT1G54360 488 / 3e-169 TAF6b4, TAF6b3, TAF6b2, TAF6b1 TBP-associated factor 6B4, TBP-ASSOCIATED FACTOR 6B2, TBP-ASSOCIATED FACTOR 6B1, TBP-ASSOCIATED FACTOR 6B (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G359400
[exp]
625 / 0 AT1G04950 526 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033805
[exp]
755 / 0 AT1G04950 686 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
Lus10014628
[exp]
739 / 0 AT1G04950 677 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
Lus10016578
[exp]
630 / 0 AT1G04950 617 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
Lus10002443
[exp]
618 / 0 AT1G04950 603 / 0.0 TBP-associated factor 6, EMBRYO DEFECTIVE 2781, TATA BOX ASSOCIATED FACTOR II 59 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0012 Histone PF02969 TAF TATA box binding protein associated factor (TAF)
CL0020 TPR PF07571 TAF6_C TAF6 C-terminal HEAT repeat domain
Representative CDS sequence
>Potri.014G161100.3 pacid=42762586 polypeptide=Potri.014G161100.3.p locus=Potri.014G161100 ID=Potri.014G161100.3.v4.1 annot-version=v4.1
ATGAGCATAGTAGCGAAAGAGACAATCGAAGTGATAGCACAAAGCATAGGAATCAGCAATTTGTCCGAAGATGTTGCACTTACTCTCGCTCCTGATGTCG
AATTCCGCATGCGTCAAATCATGCAGGAAGCTATCAAATGTATGCGCCATTCCAAGAGGACTAGATTGACTACAGATGATGTTGATGGTGCGCTTAACCT
TACAAATGTTGAGCCAATATATGGCTTTGCTTCTGGAGGTGCTTTGCAGTTCAAAAGAGCTATTGGTCATAGAGATTTGTTTTATGTTGATGACAAGGAT
ATTGATTTTAAAGATGTGATTGAGGCACCTTTGCCAAAAGCACCACTTGATACCGCAGTTGTTTGTCACTGGCTCGCTATTGAAGGTGTCCAACCTGCCA
TCCCAGAAAATGCTCCATTGGAAGTTATTGCACCTCCTTCTGATGGCAAAATCAGCGAACAAAATGATGAATTTCCAGTTGATATCAAATTGCCAGTTAA
GCATGTATTGTCTAGGGAGTTACAGCTATACTTTGATAAAATCACAGATCTTACAGTGAGAAGGTCTGATTCTGTTCTCTTTAAAGAAGCATTAGTGAGT
TTGGCCACTGACTCGGGACTTCATCCGTTAATTCCTTATTTCACATACTTTATAGCGGACGAGGTTGCTCGTGGTTTAAATGATTATTCTCTTCTCTTTG
CTTTGATGCGTGTTGTTTGGAGTCTTCTCCAGAATCCTCACATACACATTGAACCTTATCTGCACCAATTGATGCCATCTGTAGTCACCTGCCTTGTTGC
GAGAAAGTTAGGGAATAGATTTGCAGACAACCACTGGGAACTCAGGGACTTCACTGCTAACTTAGTTGCCTCAATATGCAAAAGATTTGGGCATGTTTAT
AACAGTCTTCAGACACGTTTGACAAAAACCTTGCTCAATGCTCTTTTGGACCCAAAGCGCTCATTGACGCAGCATTATGGAGCAATACAAGGATTGGCAG
CTCTTGGGCCTAATGTGCAGGTTCGCCTTCTTCTACTGCCAAATCTCAAACCATATCTCCAACTTCTTGAACCAGAGATGCTTCTTGAAAAGCAAAAGAA
TGAGATGAAGAGGCATGAAGCTTGGCATGTTTATGGAGCGTTGCTGTGTGCAGCGGGTCAATCCATATACGACCGCCTCAAGATGTTCCCAGCATTGATG
TCCCACCCAGCATGTGCTGTATTAAGGACTAATGAAAAAGTAGTTACTAAAAGGCCAGAAAACTATCAAGATAAACGCAAGGCAAGCATGGAGCATATGG
AACAGCCGCCACCAAAGAAGATAGCAACTGATGGTCCAGTCGATATGCAAGTGGAACCAATAGCTCCAGTCCCTTTAGGTGATTCTAAAACAGGATTGTC
GACATCATCTGAGCATACGCCTAATTATAGCGAAGCAGGCAGCAGAAATCAAAAAGACAAGGGTGATAGTCAAGCTATAAAGACATCAGCCATTCTCAGT
CAGGTTTGGAAGGACGACTTGAATTCCGGGCATCTTCTGGTATCCCTGTTTGAGCTGTTTGGTGAGAGCATCCTCTCCTTCATTCCATCTCCGGAGATGT
CATTGTTCTTGTGA
AA sequence
>Potri.014G161100.3 pacid=42762586 polypeptide=Potri.014G161100.3.p locus=Potri.014G161100 ID=Potri.014G161100.3.v4.1 annot-version=v4.1
MSIVAKETIEVIAQSIGISNLSEDVALTLAPDVEFRMRQIMQEAIKCMRHSKRTRLTTDDVDGALNLTNVEPIYGFASGGALQFKRAIGHRDLFYVDDKD
IDFKDVIEAPLPKAPLDTAVVCHWLAIEGVQPAIPENAPLEVIAPPSDGKISEQNDEFPVDIKLPVKHVLSRELQLYFDKITDLTVRRSDSVLFKEALVS
LATDSGLHPLIPYFTYFIADEVARGLNDYSLLFALMRVVWSLLQNPHIHIEPYLHQLMPSVVTCLVARKLGNRFADNHWELRDFTANLVASICKRFGHVY
NSLQTRLTKTLLNALLDPKRSLTQHYGAIQGLAALGPNVQVRLLLLPNLKPYLQLLEPEMLLEKQKNEMKRHEAWHVYGALLCAAGQSIYDRLKMFPALM
SHPACAVLRTNEKVVTKRPENYQDKRKASMEHMEQPPPKKIATDGPVDMQVEPIAPVPLGDSKTGLSTSSEHTPNYSEAGSRNQKDKGDSQAIKTSAILS
QVWKDDLNSGHLLVSLFELFGESILSFIPSPEMSLFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Download tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Potri.014G161100
[exp]
0 1 Pt-TAFII59.1
AT1G42990 bZIP AtBZIP60 Bbasic region/leucine zipper m... Potri.005G257900
[exp]
17.29 0.5513
AT5G35520 MIS12, ATMIS12 MIS12 HOMOLOGUE, ARABIDOPSIS M... Potri.015G055500
[exp]
60.73 0.5329
AT2G04740 ankyrin repeat family protein ... Potri.014G163200
[exp]
63.91 0.5203
AT1G56300 Chaperone DnaJ-domain superfam... Potri.013G010800
[exp]
103.48 0.4981
AT1G08090 LIN1, ACH1, NRT... LATERAL ROOT INITIATION 1, nit... Potri.004G213716
[exp]
109.30 0.5154
Potri.001G016032
[exp]
124.09 0.5037
AT3G28370 unknown protein Potri.001G350100
[exp]
131.07 0.4684
AT3G56130 biotin/lipoyl attachment domai... Potri.010G183200
[exp]
165.38 0.4946

Potri.014G161100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.