Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FDH1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14780 581 / 0 FDH formate dehydrogenase (.1) AT1G17745 105 / 2e-24 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 100 / 9e-23 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 94 / 1e-20 D-3-phosphoglycerate dehydrogenase (.1) AT1G12550 91 / 3e-20 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G72190 91 / 6e-20 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 87 / 8e-19 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G79870 85 / 2e-18 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G68010 63 / 9e-11 ATHPR1, HPR hydroxypyruvate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G022800 [exp] 110 / 5e-26 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 107 / 3e-25 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.010G249600 [exp] 105 / 2e-24 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.008G009500 [exp] 101 / 4e-23 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.009G096600 [exp] 101 / 5e-23 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 100 / 7e-23 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.002G151200 [exp] 95 / 1e-21 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 91 / 2e-20 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.003G119000 [exp] 89 / 9e-20 AT2G45630 327 / 2e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032150 [exp] 632 / 0 AT5G14780 618 / 0.0 formate dehydrogenase (.1) Lus10014535 [exp] 626 / 0 AT5G14780 607 / 0.0 formate dehydrogenase (.1) Lus10027868 [exp] 108 / 1e-25 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 105 / 2e-24 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 105 / 3e-24 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10035758 [exp] 97 / 2e-21 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10041393 [exp] 90 / 8e-20 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10036537 [exp] 89 / 1e-19 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 86 / 2e-18 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 84 / 5e-18 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [poplar] [flax] Form_Glyc_dh PF00389 [poplar] [flax] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL0063 [poplar] [flax] NADP_Rossmann PF03446 [poplar] [flax] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.014G161300.1 pacid=42763197 polypeptide=Potri.014G161300.1.p locus=Potri.014G161300 ID=Potri.014G161300.1.v4.1 annot-version=v4.1 ATGGCCATGAAGCGTGCTGCTACCTCTGCAATTCGCGCTTTCTCGTCTTCATCACCAGCATCATCTGTGAGTTCTGGCTCCTCAACTAGGCTTCTCCATG CTTCGGCAGAAAGCAAAAAAATTGTTGGGGTGTTTTACAAAGCAAATGAGTATGCTTCATTGAATCCTAATTTTGTGGGTTCCTTGGAAGGAGCTTTGGG CATTCGTGACTGGCTGGAATCACAAGGCCACCAGTACATTGTCACTGATGACAAAGAAGGACTGGATTCTGAACTTGAAAAGCATATTCCTGATCTCCAT GTGCTCATTACTACCCCTTTCCACCCCGCCTATGTAACGGCAGAAAGGATCAAGAGGGCAAAAAATCTGCAACTGCTTCTCACTGCTGGAATAGGCTCTG ATCATATAGATTTGGAGGCAGCAGCTGCTGCTGGGTTAACTGTTGCAGAGGTCACAGGAAGCAATGTCGTCTCGGTTGCAGAAGATGAGCTCATGAGAAT CCTTATTCTTGTACGAAATTTCTTACCTGGATATCATCAAGTTATCAATGGGGAGTGGAATGTGGCAGCTATCGCCTACAGAGCTTATGATCTTGAAGGA AAGACAGTGGGAACTGTTGGTGCTGGACGCATTGGAAAGCTTTTACTCCAGAGGTTGAAGCCTTTCAATTGCAACCTACTGTATCATGACAGACTTAAGA TGGATCCAGAATTGGAGAAACAGACAGGGGCAAAGTTTGAGGAGGATCTTGATTCATTGCTTTCTAAATGTGACGTAGTTGTCATCAACACGCCGCTTAC AGAGAAAACAAGAGGGATGTTTGACAAAGAAAGGATTGCAAAGATGAAGAAAGGAGTTCTTATTGTTAACAATGCCCGAGGAGCAATCATGGACACTCAA GCAGTTGTTGATGCTTGCTCCAGTGGACAGATTGGAGGTTACAGTGGAGATGTTTGGAATCCGCAACCAGCTCCCAAGGACCATCCATGGCGTTACATGC CGAACCATGCAATGACCCCCCATATTTCTGGAACCACTATAGATGGACAGTTGCGATACGCCGCCGGAGTTAAGGACATGCTTGACAGATACTTCAAGGG AGAAGAATTTCCTCCACAGAATTACATTGTGAAGGAGGGCAAACTGGCCAGTCAGTACCTGTGA
AA sequence Show only first row Show all	>Potri.014G161300.1 pacid=42763197 polypeptide=Potri.014G161300.1.p locus=Potri.014G161300 ID=Potri.014G161300.1.v4.1 annot-version=v4.1 MAMKRAATSAIRAFSSSSPASSVSSGSSTRLLHASAESKKIVGVFYKANEYASLNPNFVGSLEGALGIRDWLESQGHQYIVTDDKEGLDSELEKHIPDLH VLITTPFHPAYVTAERIKRAKNLQLLLTAGIGSDHIDLEAAAAAGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGYHQVINGEWNVAAIAYRAYDLEG KTVGTVGAGRIGKLLLQRLKPFNCNLLYHDRLKMDPELEKQTGAKFEEDLDSLLSKCDVVVINTPLTEKTRGMFDKERIAKMKKGVLIVNNARGAIMDTQ AVVDACSSGQIGGYSGDVWNPQPAPKDHPWRYMPNHAMTPHISGTTIDGQLRYAAGVKDMLDRYFKGEEFPPQNYIVKEGKLASQYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14780		FDH	formate dehydrogenase (.1)		Potri.014G161300 [exp]	0	1	FDH1
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.014G193800 [exp]	2.00	0.9594
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Potri.010G142900 [exp]	6.48	0.9450
AT1G58420			Uncharacterised conserved prot...		Potri.014G014500 [exp]	25.05	0.9519
					Potri.001G194100 [exp]	37.08	0.9456
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.008G122100 [exp]	40.34	0.9386
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G058800 [exp]	42.33	0.9425
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241600 [exp]	45.69	0.9082	AAT.2
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016100 [exp]	47.66	0.9408
AT5G05840			Protein of unknown function (D...		Potri.010G195200 [exp]	50.37	0.9406
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.009G046100 [exp]	50.49	0.9338

Compare expression of checked genes

Potri.014G161300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.