Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 368 / 1e-123 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 349 / 2e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G55550 344 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 234 / 2e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 230 / 1e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 183 / 3e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 178 / 2e-51 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 163 / 6e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 153 / 1e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G222400 [exp] 739 / 0 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 556 / 0 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 551 / 0 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 540 / 0 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 533 / 0 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 262 / 2e-82 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 260 / 1e-81 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 252 / 4e-79 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 243 / 1e-75 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043168 [exp] 515 / 0 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 511 / 2e-179 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 483 / 8e-168 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 476 / 7e-165 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 473 / 1e-163 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 467 / 2e-161 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 464 / 3e-161 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 454 / 2e-157 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 354 / 9e-120 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 245 / 1e-76 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.014G161600.3 pacid=42763859 polypeptide=Potri.014G161600.3.p locus=Potri.014G161600 ID=Potri.014G161600.3.v4.1 annot-version=v4.1 ATGCAATCTGATAGTGGCAAGCTGTTCATTGGGGGAATTTCATGGGACACCGATGAAGAACGGCTCAAGGGCTATTTTCGATCTTTTGGGGAGGTGGTGG AGGCTGTTATAATGAAGGATCGCACCACAGGGCGTGCCCGTGGATTTGGTTTTGTTGTTTTTGCTGACCCAGCTGTTGCAGAGAGAGTCATTAAGGAAAA ACACAGCATTGATGGCAGAATGGTTGAGGCAAAAAAGGCTGTTCCTAGGGATGACCAGAATATTCTGAATAGAAACAGTGGTGGTAGCATCCACAGTTCT CCCGGTCCAGGGCGTACAAAAAAGATTTTCGTAGGAGGCTTAGCATCCACAGTCACAGAAAATGATTTTAAGAATTATTTTGACCAGTTTGGGACCATCA TAGATGTTGTGGTGATGTATGATCATAACACACAGAGGCCAAGGGGATTTGGGTTCATCACTTTTGATTCTGAGGAGGCAGTGGACAAAGTTTTGATGAG GACTTTTCATGAACTGAATGGAAAAATGGTTGAGGTCAAGAGAGCTGTTCCCAAAGAGTTATCACCCGGTCCTAGTCGCAGCCCACTTGGTGGATATAAT TATGGTCTAAATAGGGTTAATAGCTTCCTTAATGGCTACACTCAGGGATATACTCCAGGTACAGTTGGAGGCTATGGACTTAGGATGGATGGCAGATTCA GTTCAGTTGCTGGTGTCCGAAGTGGTTTCCCTCCATTCGGTTCTGGTTATGGAATGGGTATGAATTTTGAGCCAGCATTGAGCCCTAGTTACGGGGGCAA TGCAAATTTTAATAGCAATCTCAGCTATGGGCGGGGAATGAATCCTTACTATATTGGTAATTCTAATAGCCTTGCTAGACCTGTAGGATATGATGGAGGT AATGGAGGAAATACTTCATTTTTCAGCTCGGCAACAAGAAACTTGTGGGGAAATGGGGGGCTAAATCATAACTCCAACTCTACAAGTTCAAATGCATACA TGGGATCTGGAACTGGAAGCCTTGGAGGAAGCACCTTTGGCAACAGTGGGGCTAATTGGAGTTCTTCATCACTTCCAGTTCAAGGTGGAGGAAATAATGT TTCTAATAGCAATCTGAGTTTTGGGTATGGAAGTGGTGAAAATAGTTTTGGTTTGGGCATAGGTAGTTATGCAAGAAACAGTGGGAACAATGTGGGCGCA ACAATATCACATGCTGCATCAAATGGTAGTTTTGATGGAGCATTTGCTGACCTTTATGGTGGTAGTTCAGATTATGGGGACCCCGCTTGGCAGTCATCAA ATTCTGAGCGAGATGGATCTGTTTCCTTTGGTTATGGTCTTGGCAATGCCACTTCTGATGTTCCAGTCAAAACTTCCCCTGGTTATGTTGGTGGTTATAG TGTTAATAAGAGACAGTCAAATAGAGGAATTGCTACCTAG
AA sequence Show only first row Show all	>Potri.014G161600.3 pacid=42763859 polypeptide=Potri.014G161600.3.p locus=Potri.014G161600 ID=Potri.014G161600.3.v4.1 annot-version=v4.1 MQSDSGKLFIGGISWDTDEERLKGYFRSFGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKEKHSIDGRMVEAKKAVPRDDQNILNRNSGGSIHSS PGPGRTKKIFVGGLASTVTENDFKNYFDQFGTIIDVVVMYDHNTQRPRGFGFITFDSEEAVDKVLMRTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYN YGLNRVNSFLNGYTQGYTPGTVGGYGLRMDGRFSSVAGVRSGFPPFGSGYGMGMNFEPALSPSYGGNANFNSNLSYGRGMNPYYIGNSNSLARPVGYDGG NGGNTSFFSSATRNLWGNGGLNHNSNSTSSNAYMGSGTGSLGGSTFGNSGANWSSSSLPVQGGGNNVSNSNLSFGYGSGENSFGLGIGSYARNSGNNVGA TISHAASNGSFDGAFADLYGGSSDYGDPAWQSSNSERDGSVSFGYGLGNATSDVPVKTSPGYVGGYSVNKRQSNRGIAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.014G161600 [exp]	0	1
AT2G28315			Nucleotide/sugar transporter f...		Potri.009G011100 [exp]	2.82	0.9386
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	10.00	0.9205
AT3G61660			unknown protein		Potri.002G168300 [exp]	10.72	0.8970
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	12.00	0.9073
AT4G01400			unknown protein		Potri.002G179600 [exp]	12.32	0.9110
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	15.49	0.9169	Pt-FLA14.7
AT1G09610			Protein of unknown function (D...		Potri.004G226800 [exp]	16.61	0.9140
AT5G01970			unknown protein		Potri.016G141300 [exp]	19.07	0.8938
AT3G06035			Glycoprotein membrane precurso...		Potri.010G033400 [exp]	19.67	0.9183
AT1G68725		AGP19, ATAGP19	arabinogalactan protein 19 (.1...		Potri.010G132500 [exp]	19.97	0.8999

Compare expression of checked genes

Potri.014G161600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.