Plant FIBer expression Database

Potri.014G161800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04845 278 / 2e-95 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012349
[exp]
323 / 1e-113 AT2G04845 288 / 7e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Lus10006397
[exp]
270 / 8e-92 AT2G04845 238 / 2e-79 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF13302 Acetyltransf_3 Acetyltransferase (GNAT) domain
Representative CDS sequence
>Potri.014G161800.3 pacid=42763633 polypeptide=Potri.014G161800.3.p locus=Potri.014G161800 ID=Potri.014G161800.3.v4.1 annot-version=v4.1
ATGGAGAGTAAGGCAGCAAAAAGAGGAGAGTGTGATTTGCAGCAAAGCATAATCGGTGGTGGGCTGCAAAGTAAGAGTGAGGAAATGAGAGGAGTAAGCT
TGGAAGGAGAGAAGGTGATACTTGTGCCCTACATGGAGGCCCACGTCCCAAAGTATCACCACTGGATGCAAGACCCCTTTCTTCTCCAAGCCACCGGCTC
TGAGCTCTTATCCCTTCAAGACGAGTATCAGATGCAGCTCTCTTGGACCCAAGACCCCCTCAAAAGGACTTTTATTGTACTGGATAAGGAAATGATACAA
GCTGGTTTTGTTCATGGAGATCCTCATGTCGAAGCTATGGTAGGCGATGTAAATATATTCATGAATGATGTGGATGATCCTCAAGTGGCCGAGATCGAGA
TAATGATAGCTGAACCAAAGAGTCGTGGAAAAGGACTCGGGAAGGAATCTGTGTTGATGATGATGGCCTATGCTGTTCGGGACCTTGGGATCCATGTATT
CCGTGCTAAAATTGGAGAATCAAATGGATCATCTCTTAATATGTTTTGTAATTTGGGTTTTCAGGAGACTTCTCGCAGTGAAATCTTCAAAGAGGTGACA
CTGGAATTACCAATGACACAGCCTAAGTGTGAGGAATTACTGAAATTGATTGATAATGTGGTTACACATGTGTAA
AA sequence
>Potri.014G161800.3 pacid=42763633 polypeptide=Potri.014G161800.3.p locus=Potri.014G161800 ID=Potri.014G161800.3.v4.1 annot-version=v4.1
MESKAAKRGECDLQQSIIGGGLQSKSEEMRGVSLEGEKVILVPYMEAHVPKYHHWMQDPFLLQATGSELLSLQDEYQMQLSWTQDPLKRTFIVLDKEMIQ
AGFVHGDPHVEAMVGDVNIFMNDVDDPQVAEIEIMIAEPKSRGKGLGKESVLMMMAYAVRDLGIHVFRAKIGESNGSSLNMFCNLGFQETSRSEIFKEVT
LELPMTQPKCEELLKLIDNVVTHV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G04845 Acyl-CoA N-acyltransferases (N... Potri.014G161800
[exp]
0 1
AT1G16220 Protein phosphatase 2C family ... Potri.001G473300
[exp]
6.48 0.8451
AT4G26340 F-box/RNI-like/FBD-like domain... Potri.011G024200
[exp]
8.24 0.8098
AT1G10170 ATNFXL1 NF-X-like 1 (.1) Potri.015G034500
[exp]
10.72 0.7832
AT3G54190 Transducin/WD40 repeat-like su... Potri.006G113000
[exp]
15.16 0.8066
AT3G49660 AtWDR5a human WDR5 \(WD40 repeat\) hom... Potri.015G026100
[exp]
17.74 0.8081
AT5G15880 unknown protein Potri.004G105400
[exp]
19.41 0.8013
AT4G14110 FUS7, EMB143, C... FUSCA 7, EMBRYO DEFECTIVE 143,... Potri.003G022001
[exp]
22.71 0.7667
AT1G32410 Vacuolar protein sorting 55 (V... Potri.001G146600
[exp]
23.62 0.7745
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Potri.010G049100
[exp]
25.00 0.8089
AT1G04555 unknown protein Potri.010G064500
[exp]
27.98 0.8197

Potri.014G161800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.