Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04842 1089 / 0 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT5G26830 419 / 2e-137 Threonyl-tRNA synthetase (.1) AT1G17960 238 / 4e-71 Threonyl-tRNA synthetase (.1) AT1G18130 83 / 2e-18 Class II aaRS and biotin synthetases superfamily protein (.1) AT3G62120 49 / 1e-05 Class II aaRS and biotin synthetases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145600 [exp] 412 / 2e-134 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1) Potri.010G096500 [exp] 377 / 9e-124 AT5G26830 827 / 0.0 Threonyl-tRNA synthetase (.1) Potri.002G187000 [exp] 48 / 2e-05 AT3G62120 827 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2) Potri.014G112400 [exp] 47 / 4e-05 AT3G62120 812 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012360 [exp] 1071 / 0 AT2G04842 1035 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10021402 [exp] 417 / 2e-136 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10005351 [exp] 414 / 1e-135 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030841 [exp] 410 / 3e-134 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030645 [exp] 399 / 2e-126 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10006406 [exp] 218 / 9e-68 AT2G04842 203 / 6e-63 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030843 [exp] 169 / 1e-47 AT5G26830 248 / 2e-77 Threonyl-tRNA synthetase (.1) Lus10030644 [exp] 106 / 7e-27 AT1G17960 150 / 3e-44 Threonyl-tRNA synthetase (.1) Lus10016281 [exp] 45 / 0.0003 AT3G62120 876 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00587 [poplar] [flax] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0458 [poplar] [flax] IIaaRS-ABD PF03129 [poplar] [flax] HGTP_anticodon Anticodon binding domain CL0094 [poplar] [flax] Peptidase_ME PF07973 [poplar] [flax] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain
Representative CDS sequence Show only first row Show all	>Potri.014G162200.1 pacid=42763512 polypeptide=Potri.014G162200.1.p locus=Potri.014G162200 ID=Potri.014G162200.1.v4.1 annot-version=v4.1 ATGTTTGTGTTGCACAAAATGGCCACATCTCCCTCTTCATCTCTCTGCTCTTTCTCTCTTTTCCTCTCCAAACCCTCCTCACTGCCTCTTCTGAAACCCC CGTTATTATCCCTCCACTCTCCTCCTCTCAAAAGATTCATTTCCACTGCATCAGAACTGCAACATGACACCCAAGCTAGGAGGAGGACTCTTCTTGGGTC TCCTTATACCAAAACAAGTCCTCTACTTTCCCTATCTACTGCAGCTATTGCCACCGAGTCTGCCACCGTTTCCCATAACGACACAGCAGAGAATGAGGAA ACTGAAAAACTCGTGCTTCCCACCAATGATTCATCCGAGAAACTTCTCAGAATTCGCCACACGTGTGCACATGTGATGGCTATGGCAGTTCAAAAGCTGT ATCCTGAAGCTAAAGTGACAATTGGGCCTTGGATAGAAAATGGGTTTTACTATGATTTTGATATGGACCCTTTGACTGATAAAGACCTCAAGAGGATTAA GAAGGAGATGGATCGTATCATTGGTCGAAATTTACCGCTTGCAAGGGAAGATGTTTCTAGAGATGAAGCACAGAGGAGAATAATGGCTGTTAATGAACCT TACAAGATGGAGATTTTGGAAAGCATTAAAGAAGATCCCATCACTATCTATCATATTGGCGATGAGTGGTGGGATCTTTGTGCGGGACCTCATGTTGAAT CTACTGGAAATATTAATAGGAAAGCTGTTGAGCTTGAGTCTGTTGCTGGTGCTTACTGGAGAGGAGATGAAAAGAAACCAATGCTGCAGAGGATCTATGG AACAGCTTGGGAGAATGAAGACCAGCTAAAAGCATACCTTCACTTTAAAGAAGAGGCTAAACGTCGAGACCACAGACGCCTTGGCCAAGATCTTGATCTC TTTTCTATACAGGATGAAGCTGGTGGAGGCTTAGTCTTCTGGCATCCAAAAGGTGCTGTTATTAGACATATTATTGAAGATTCGTGGAAGAAAACACATA TAGAACATGGCTATGATTTGTTATACACTCCCCATGTGGCAAAGGCAGATCTATGGAAGATTAGTGGTCATCTGGACTTTTATAGGGAGAATATGTTTGA TCAGATGAAGATTGAGGATGAACAATACCAACTTCGACCTATGAATTGCCCTTACCATATTTTGTTATACAAAAGAAAGCTCAACTCTTATCGTGATTTC CCAATCAGGGTTGCAGAGCTAGGAACAGTATATAGATATGAGTTGTCTGGAAGCTTACACGGTCTTTTCCGTGTAAGAGGTTTTACCCAGGATGATGCAC ATATATTTTGCTTAGAAGATCAAATCAAAGATGAAATTAGGGGTGTCCTAGATCTTACAGAAGAGATACTATTGCAATTTGGTTTCAGACGGTATGAAGT TAATCTCTCAACTAGGCCTGAAAAATCTGTGGGAGATGATGATATATGGGAAAAAGCAACATCTGCCCTTAGAGATGCTTTGGATGACAAGGGGTGGAGC TTTCAAATTGATGAAGGTGGCGGTGCCTTTTATGGTCCAAAAATTGATCTTAAGATTGAGGATGCTCTTGGAAGAAAGTGGCAGTGCTCTACTATACAGG TTGATTTCAATTTACCTCAGAGATTTGATGTTACTTATGTTGATTCAAACACGGAGAAAAAGCGGCCTATCATGATACATAGAGCGGTGCTTGGATCCTT GGAGCGGTTTTTTGGGGTCCTCATAGAGCATTATGCTGGAGACTTTCCATTGTGGCTTTCTCCAGTACAGGTCCGCATTTTACCAGTAACAGACACACAG CTTGAATATTGCAAAGAGGTGATCAGCAAACTGAAAGGCAATGGTATTCGGGCTGAAGTTTGCCAAGGCGAGCGCCTGCCAAAGCTCATTAGAAATGCAG AGAAGCAGAAAATTCCTTTAATGGCAGTTGTGGGCCCCAAGGAGGCTGAGACGCAAACTGTTACAATTAGATCTAGGTTTAGTGGGGAGGTTGGGACCAT CGAAATTGATGATTTTATAAGCAGAATCAAGTCAGCCATTGAAAGGAGAACTTCATTATGA
AA sequence Show only first row Show all	>Potri.014G162200.1 pacid=42763512 polypeptide=Potri.014G162200.1.p locus=Potri.014G162200 ID=Potri.014G162200.1.v4.1 annot-version=v4.1 MFVLHKMATSPSSSLCSFSLFLSKPSSLPLLKPPLLSLHSPPLKRFISTASELQHDTQARRRTLLGSPYTKTSPLLSLSTAAIATESATVSHNDTAENEE TEKLVLPTNDSSEKLLRIRHTCAHVMAMAVQKLYPEAKVTIGPWIENGFYYDFDMDPLTDKDLKRIKKEMDRIIGRNLPLAREDVSRDEAQRRIMAVNEP YKMEILESIKEDPITIYHIGDEWWDLCAGPHVESTGNINRKAVELESVAGAYWRGDEKKPMLQRIYGTAWENEDQLKAYLHFKEEAKRRDHRRLGQDLDL FSIQDEAGGGLVFWHPKGAVIRHIIEDSWKKTHIEHGYDLLYTPHVAKADLWKISGHLDFYRENMFDQMKIEDEQYQLRPMNCPYHILLYKRKLNSYRDF PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILLQFGFRRYEVNLSTRPEKSVGDDDIWEKATSALRDALDDKGWS FQIDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDVTYVDSNTEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPVQVRILPVTDTQ LEYCKEVISKLKGNGIRAEVCQGERLPKLIRNAEKQKIPLMAVVGPKEAETQTVTIRSRFSGEVGTIEIDDFISRIKSAIERRTSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Potri.014G162200 [exp]	0	1
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.004G142300 [exp]	1.00	0.9802
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	2.00	0.9753	Pt-CLPC.2
AT5G13720			Uncharacterised protein family...		Potri.009G057300 [exp]	2.44	0.9763
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.002G078700 [exp]	2.64	0.9746	NADK2.2
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Potri.010G176400 [exp]	3.46	0.9713
AT5G57960			GTP-binding protein, HflX (.1)		Potri.002G031100 [exp]	4.89	0.9742
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.009G060500 [exp]	5.19	0.9757	CCD1.5
AT3G05350			Metallopeptidase M24 family pr...		Potri.013G021400 [exp]	6.00	0.9749
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	6.70	0.9735
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	8.06	0.9753	ALB3.2

Compare expression of checked genes

Potri.014G162200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.