Plant FIBer expression Database

Potri.014G162800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G223100
[exp]
41 / 9e-05 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G162800.1 pacid=42764371 polypeptide=Potri.014G162800.1.p locus=Potri.014G162800 ID=Potri.014G162800.1.v4.1 annot-version=v4.1
ATGGCCACTGTCGAGGTTGTGTCAGCGCAGAGTGCACTTGCAGAGGAAAAAACTGAACAACCAATCAAGATTGAGACCGCCACAGAAGAAGCAGTCGCTG
CAGCACCAGAGGCAGTAGCTGAAGAGCCAAAAGAAGAAGTAGAGACACCTGCAGCATCTGAAGAGGCCGTGGCACCAGTCCCCGAGGCCCCAGCTGAAGT
TGAGACTAAAGAGGTGGTAGAAGAGACCAAGATTCTTGCAGAAGAGCCAACAGTGGTAGAGAAAACAGAGGAGGAGACACCTAAGGAAACACCAGAGCCG
GTTGTTGAGGAGACAAAAGAGGAGTCTCCAGAGGAAGTACCTGCAGAGCAGGTTGTTGAAGAAGCTAAAGAGGCTACCGAGTCTGGTGAGACACAGGCAC
CAGAACCAGAAGTTGCAGTCGAAGCTCCAAAGGAAGAAGAAGAAGTCAAGGGAGAAGAGAAACCTGTTGAAGCAGTGGAGAAGGTTGAAACAGAAACCCC
AGTAGAAAAGACTGAGTAA
AA sequence
>Potri.014G162800.1 pacid=42764371 polypeptide=Potri.014G162800.1.p locus=Potri.014G162800 ID=Potri.014G162800.1.v4.1 annot-version=v4.1
MATVEVVSAQSALAEEKTEQPIKIETATEEAVAAAPEAVAEEPKEEVETPAASEEAVAPVPEAPAEVETKEVVEETKILAEEPTVVEKTEEETPKETPEP
VVEETKEESPEEVPAEQVVEEAKEATESGETQAPEPEVAVEAPKEEEEVKGEEKPVEAVEKVETETPVEKTE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G162800
[exp]
0 1
AT2G41770 Protein of unknown function (D... Potri.016G055700
[exp]
8.30 0.8364
Potri.002G223100
[exp]
15.36 0.8153
AT1G33800 Protein of unknown function (D... Potri.013G102200
[exp]
22.31 0.8200
AT5G34940 ATGUS3 glucuronidase 3 (.1.2.3) Potri.006G062200
[exp]
23.66 0.8097
AT5G64020 TBL14 TRICHOME BIREFRINGENCE-LIKE 14... Potri.005G065100
[exp]
41.18 0.7761
AT3G51770 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODU... Potri.009G075300
[exp]
45.89 0.7996
AT2G04850 Auxin-responsive family protei... Potri.014G161700
[exp]
48.21 0.7910
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Potri.010G187600
[exp]
57.57 0.7947
AT5G24320 Transducin/WD40 repeat-like su... Potri.012G018200
[exp]
70.99 0.7468
AT1G31720 Protein of unknown function (D... Potri.004G235000
[exp]
80.19 0.7582

Potri.014G162800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.