Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04780 227 / 2e-74 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT5G60490 108 / 3e-28 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT1G03870 105 / 5e-27 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT5G44130 100 / 2e-25 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT2G20520 98 / 3e-24 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G03170 95 / 3e-23 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT3G60900 79 / 1e-16 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 73 / 1e-14 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G46550 73 / 2e-14 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT5G55730 55 / 2e-08 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223300 [exp] 317 / 2e-109 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.013G120600 [exp] 111 / 1e-29 AT5G44130 182 / 3e-57 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.012G127900 [exp] 103 / 2e-26 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.006G129200 [exp] 102 / 5e-26 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.016G088700 [exp] 102 / 5e-26 AT5G03170 203 / 2e-65 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.015G129400 [exp] 101 / 1e-25 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.001G320800 [exp] 99 / 7e-25 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G093300 [exp] 99 / 1e-24 AT5G44130 173 / 9e-54 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.013G151300 [exp] 92 / 4e-22 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006399 [exp] 225 / 3e-73 AT2G04780 226 / 9e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10012351 [exp] 220 / 2e-71 AT2G04780 223 / 9e-73 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10001733 [exp] 216 / 7e-70 AT2G04780 231 / 4e-76 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10002273 [exp] 214 / 5e-69 AT2G04780 233 / 2e-76 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10033651 [exp] 111 / 2e-29 AT2G20520 234 / 2e-77 FASCICLIN-like arabinogalactan 6 (.1) Lus10017696 [exp] 108 / 2e-28 AT2G20520 244 / 2e-81 FASCICLIN-like arabinogalactan 6 (.1) Lus10002978 [exp] 100 / 2e-25 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 98 / 3e-24 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 89 / 1e-20 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 88 / 2e-20 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.014G162900.1 pacid=42763642 polypeptide=Potri.014G162900.1.p locus=Potri.014G162900 ID=Potri.014G162900.1.v4.1 annot-version=v4.1 ATGAAGTTTTCTATGATTATTGTGCTTAGCAGCACACTGCTGTTTTCGTGCACTCCACTAGCATATGCTCAAAAAGTAGCTAGTCCTCCAGCACCAACCC CAACTCCATCCCCAGCACCAGCACCATCACCTCCTTACGTTAACCTCACTGATTTACTCTCTGTTGCTGGCCCATTCCACAACTTCCTTAACTACCTTGA GTCCACTAAAGTCATTGACACCTTTCAAAACCAAGCCAACAACACTGATGAAGGCATTACCATCTTCGTACCAAAAGATGATGCCTTCAAAAATCTCAAG AAGGCTTCTTTGTCAAACCTAACTCAAGACCAGCTCAAGCAACTCATTCTTTTTCATGCCTTGCCACATTATTACTCGTTGTCTGATTTCAAGAACCTTA GCCAAGTGAGCCCTGTCAGCACATTTGCTGGTGCAGGAGGATATGCTTTGAATTTCACCGATACATCTGGGACCGTGCACCTTGATTCAGGATGGTCTAA AACTAAAGTTAGTAGTAGTGTGCATTCAACTGATCCTGTTGCAATCTATCAAGTTGACAAAGTCCTCCTTCCTGAGGCAATCTTTGGTACTAATATACCT CCAACCCCAGCTCCAGCACCAGCTCCTGACACTAGCCCTACTGCAGATTCCCCAACATCTGACGACTCAGCAGGAGCAGGGAGCGCCCCAGGAAAGTCCC CCCCAAATTCTTCTTATAGGATCAATGGTGTAGGTATTTGGAGTCAATTGGTTCTAGCTATTGCAGGTGTGCTGGTCCTGTTTTTGTAA
AA sequence Show only first row Show all	>Potri.014G162900.1 pacid=42763642 polypeptide=Potri.014G162900.1.p locus=Potri.014G162900 ID=Potri.014G162900.1.v4.1 annot-version=v4.1 MKFSMIIVLSSTLLFSCTPLAYAQKVASPPAPTPTPSPAPAPSPPYVNLTDLLSVAGPFHNFLNYLESTKVIDTFQNQANNTDEGITIFVPKDDAFKNLK KASLSNLTQDQLKQLILFHALPHYYSLSDFKNLSQVSPVSTFAGAGGYALNFTDTSGTVHLDSGWSKTKVSSSVHSTDPVAIYQVDKVLLPEAIFGTNIP PTPAPAPAPDTSPTADSPTSDDSAGAGSAPGKSPPNSSYRINGVGIWSQLVLAIAGVLVLFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Potri.014G162900 [exp]	0	1
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.004G062400 [exp]	3.87	0.7439
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	7.21	0.7616	CLE12.1
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.007G013900 [exp]	8.36	0.7270	GMD1.1
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	11.18	0.7713
AT1G23050			hydroxyproline-rich glycoprote...		Potri.008G129200 [exp]	11.35	0.6635
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	16.85	0.7454
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	19.07	0.7340
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.015G075200 [exp]	21.93	0.6670
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	25.41	0.6992
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.006G237700 [exp]	31.81	0.6872

Compare expression of checked genes

Potri.014G162900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.