Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 329 / 6e-115 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G62450 271 / 2e-92 Immunoglobulin E-set superfamily protein (.1) AT1G12070 259 / 9e-88 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223200 [exp] 431 / 8e-155 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013700 [exp] 319 / 1e-110 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.006G010500 [exp] 318 / 2e-110 AT3G07880 317 / 5e-110 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G234600 [exp] 255 / 1e-85 AT3G07880 212 / 5e-69 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G259200 [exp] 181 / 7e-57 AT3G07880 184 / 4e-58 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006400 [exp] 326 / 1e-113 AT3G07880 313 / 1e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10001732 [exp] 325 / 3e-113 AT3G07880 310 / 6e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10002272 [exp] 321 / 6e-112 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10012352 [exp] 318 / 2e-110 AT3G07880 308 / 6e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003794 [exp] 301 / 4e-104 AT3G07880 306 / 2e-106 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10027327 [exp] 296 / 3e-102 AT3G07880 303 / 2e-105 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10039029 [exp] 292 / 3e-100 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10010491 [exp] 270 / 5e-91 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF02115 [poplar] [flax] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Potri.014G163000.11 pacid=42764444 polypeptide=Potri.014G163000.11.p locus=Potri.014G163000 ID=Potri.014G163000.11.v4.1 annot-version=v4.1 ATGTCTTTGGCTATTGGAGCTACATCAAGTTTGAGAAATATGGGGTTTGATGACGACAAGAAGAAGAAGAAGAAGGAAGGAGGAGAGAAAAGTGGAGTTC TGGAAACACGTGACGAGGATCATGATGGTGGAGTGAGGATAGGAAGGCAGATGAGTGAGAGTGAGACCTCTATGTATGCGACTGATCACGAAGAGGAAGA TGACGAGAACGGAACCAACAAACTTCAGCTGGGTCCTCAGTACACCCTCAAAGAACAGCTTGAAAAAGACAAGGATGATGAGAGCTTGAGGAAATGGAAG GAGCAGCTTCTTGGGAGTGTGGATTTGAACAACATTGGAGAAACGCTTGAACCAGATGTGAAATTTCTTAATCTTTCGATCCTCTCTCCTGGAAGACCAG ACATCGTACTTTCTATTCCTGAGAATGGGAAGCCCAAAGGCTTGTGGTTTACATTGAAAGAAGGCAGTCCCCATAGCTTGAAATTCTCCTTCCAAGTCAG TAATAACATTGTGTCTGGCCTCAAGTACACCAATACTGTTTGGAAAACTGGCGTCAAGGTGGACAGCACAAAAGAAATGCTTGGAACCTACAGTCCTCAG CCAGAGGCTTACACGCATGTTAATCCAGAGGAGACCACACCCTCGGGCATGTTTGCTAGAGGATCATACTCTGCAAGGTCGAAGTTTTTTGATGATGATA ACAAGTGCTACTTGGAGATCAACTACACCTTTGGCATTCGAAAAGAATGGGCTGCTACTTGA
AA sequence Show only first row Show all	>Potri.014G163000.11 pacid=42764444 polypeptide=Potri.014G163000.11.p locus=Potri.014G163000 ID=Potri.014G163000.11.v4.1 annot-version=v4.1 MSLAIGATSSLRNMGFDDDKKKKKKEGGEKSGVLETRDEDHDGGVRIGRQMSESETSMYATDHEEEDDENGTNKLQLGPQYTLKEQLEKDKDDESLRKWK EQLLGSVDLNNIGETLEPDVKFLNLSILSPGRPDIVLSIPENGKPKGLWFTLKEGSPHSLKFSFQVSNNIVSGLKYTNTVWKTGVKVDSTKEMLGTYSPQ PEAYTHVNPEETTPSGMFARGSYSARSKFFDDDNKCYLEINYTFGIRKEWAAT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.014G163000 [exp]	0	1
AT3G02885		GASA5	GAST1 protein homolog 5 (.1)		Potri.017G124200 [exp]	6.85	0.7760	Pt-GASA5.2
AT2G01210			Leucine-rich repeat protein ki...		Potri.004G095700 [exp]	7.21	0.7206
AT1G21695			hydroxyproline-rich glycoprote...		Potri.002G080200 [exp]	12.96	0.7056
AT4G03620			myosin heavy chain-related (.1...		Potri.011G091700 [exp]	16.12	0.7009
AT1G57775			Protein of unknown function (D...		Potri.004G110651 [exp]	16.30	0.5817
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	16.49	0.7044
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	22.60	0.6868
AT2G26695			Ran BP2/NZF zinc finger-like s...		Potri.018G066900 [exp]	22.84	0.6917
					Potri.006G240450 [exp]	23.23	0.6771
AT2G41810			Protein of unknown function, D...		Potri.006G050300 [exp]	23.32	0.6773

Compare expression of checked genes

Potri.014G163000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.