Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04740 828 / 0 ankyrin repeat family protein (.1) AT2G30600 53 / 5e-07 BTB/POZ domain-containing protein (.1.2.3.4.5) AT4G35450 47 / 2e-05 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 46 / 6e-05 AKR2B ankyrin repeat-containing 2B (.1) AT5G19000 46 / 7e-05 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT5G19330 45 / 0.0002 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT4G27780 44 / 0.0002 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 43 / 0.0004 ACBP1 acyl-CoA binding protein 1 (.1) AT3G06190 43 / 0.0004 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT3G03740 42 / 0.001 ATBPM4 BTB-POZ and MATH domain 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G184200 [exp] 55 / 4e-08 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.010G029500 [exp] 54 / 2e-07 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.009G156500 [exp] 53 / 3e-07 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 49 / 5e-06 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.008G200700 [exp] 49 / 9e-06 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.005G210000 [exp] 47 / 5e-05 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.001G276100 [exp] 43 / 0.0001 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1) Potri.002G052700 [exp] 45 / 0.0002 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.004G210100 [exp] 44 / 0.0003 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012362 [exp] 880 / 0 AT2G04740 831 / 0.0 ankyrin repeat family protein (.1) Lus10006408 [exp] 521 / 0 AT2G04740 473 / 2e-164 ankyrin repeat family protein (.1) Lus10006409 [exp] 123 / 6e-33 AT2G04740 140 / 1e-39 ankyrin repeat family protein (.1) Lus10042583 [exp] 51 / 2e-06 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10041235 [exp] 49 / 5e-06 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 48 / 2e-05 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10008421 [exp] 48 / 2e-05 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10003365 [exp] 48 / 2e-05 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10036033 [exp] 45 / 4e-05 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10010527 [exp] 45 / 0.0002 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.014G163200.2 pacid=42764060 polypeptide=Potri.014G163200.2.p locus=Potri.014G163200 ID=Potri.014G163200.2.v4.1 annot-version=v4.1 ATGCCCCCAAATCGCCCATCATCCGGATGGATAATCGACTCGGACCTGGACGAAATAGACCTTGACCCCTCCGATTTCACTTCCTCTCTCCCACTTAAAA AAGTCCCCAACGGCGATGTTTTCCAAGCCTCCCGTGCCGGTGACGTCGAACGCCTCAAATACTTGCTAGAATCAGGCGTCAATGTCAACGCGCGGGACAA GTGGGATTCCGTTGCTTTGTACTACGCTTGCCTCGCCGGACACCTTGATGCCGCCCGCATGTTGCTGGAGAGTGGGGCTATTTGCTCCGAGCACACTTTC GACGGCGACAGGTGTCACTATGCCGCTTTGAATTTGAAGGTCAGGAAGTTATTGAAGGCTTTTGAGGCTAGGCCGCCGCCTTTGGCACCGTTGCAGGCTG CCTTGAGAGATACTTTTTTGAGCTGCGAGGCTAATAGGGTTTATTTGGAACAGAGCGAGGCTATTTATCGTGTTTCAGGTCTTTCATCCAGTGGGGTATC CAATGCCAATCACTTCCCTCCAGATGTCGTATTTTTTGTGCAAGGTAGGCCTATTGAAGCTCACAGAGTCATATTAAGTGCTCGGTCACCTTTTTTTAAG AGAAAGTTCAAAACTGATTGGAGAGGCCGCAGTGAAGTGAGATTAGCAAGGGAAAAGTTGTCATATCCTGCTCTTTACAGTCTCGTTCACTTCTTTTATT CTGACAGACTGGAGATTGCTGTAGATGACATGGAAGATCTGGTAAGAATCTGCAAAGTATGCAAATGTGAATCTTTACAAAGGGTTCTTGAGAAGGAATT GATTCACCAAAAATATGCAGAGTACAAAGCACTGAGAGATCTAGACAACTCTCAGAAACGTTATATCTTACAGGGCCTATCACTTCCTGAGGAAGACAGG CTTTCTGCTGCCCTGCACCGGGTCCTTCAGAGCTCTTTGGCAAGGTCCACTATGCAACAAAACCTAGAAAATGATGTTGATAGGCTAGTATCTTCTTTTA ATGTAGTGCAAATGAATGATTGTGTAGATGATCTTGCTGATATTTGTGTAAGAGTTGATAATAAGATTTTTCGTTGCCATCAAGTGGTTTTGGCATCAAG GTCAGAATACTTTAGAGCAAGACTGTCCCATATGAAGGACTTTCATGAAGGGAAAGTGGGGTTACCTAGTGGTGCTGTTCCTTGTTTTGAAGAACATGAT TTAAGCATGGAGGCATTTGAGAAAATGGTGGAGTATATGTATACTGATGGTTTAAAGGATATAAATCCAGGGCAGGCAGAGGAAATGTTTGATGCTGCTT CAAGATATCTATTATTTCCCCTTAAGCGTGCAGTTGCTGATGTACTGTTGCCACAACTGGAAATGGTCTCACCAGCAGAACTGTGCCATTGGCTGATACT GTCAGACATGTATGGTGTCATCAAGATCAGGGAGTACTGTCTGGATACAATAGCCTGTAACTTTGAGACATTTGCTGATACTCGTGATTTCCGAGCAATG CTTTTAACGGTGCCTCCACCATCTGGAGATTCCTCGCTCCGCACAACTGCCCCAAGCGCTCCTGGAGCTGCCCTGAATACAGACCAGGGAAATCTCCTTG ATGACTTGCGAGAGAAATGGCTTGAAGCTGAAGCGGCTGATCTTGACAAGAGAGATGAGAGTGCATTACTTTTTGACAAGCGCCTGGAGATGCTTATGCT TGTGGCAAAGAAAGAATCTGAAACAGTAGTTGATGATATTCAGGATTCCCCTGCATGA
AA sequence Show only first row Show all	>Potri.014G163200.2 pacid=42764060 polypeptide=Potri.014G163200.2.p locus=Potri.014G163200 ID=Potri.014G163200.2.v4.1 annot-version=v4.1 MPPNRPSSGWIIDSDLDEIDLDPSDFTSSLPLKKVPNGDVFQASRAGDVERLKYLLESGVNVNARDKWDSVALYYACLAGHLDAARMLLESGAICSEHTF DGDRCHYAALNLKVRKLLKAFEARPPPLAPLQAALRDTFLSCEANRVYLEQSEAIYRVSGLSSSGVSNANHFPPDVVFFVQGRPIEAHRVILSARSPFFK RKFKTDWRGRSEVRLAREKLSYPALYSLVHFFYSDRLEIAVDDMEDLVRICKVCKCESLQRVLEKELIHQKYAEYKALRDLDNSQKRYILQGLSLPEEDR LSAALHRVLQSSLARSTMQQNLENDVDRLVSSFNVVQMNDCVDDLADICVRVDNKIFRCHQVVLASRSEYFRARLSHMKDFHEGKVGLPSGAVPCFEEHD LSMEAFEKMVEYMYTDGLKDINPGQAEEMFDAASRYLLFPLKRAVADVLLPQLEMVSPAELCHWLILSDMYGVIKIREYCLDTIACNFETFADTRDFRAM LLTVPPPSGDSSLRTTAPSAPGAALNTDQGNLLDDLREKWLEAEAADLDKRDESALLFDKRLEMLMLVAKKESETVVDDIQDSPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04740			ankyrin repeat family protein ...		Potri.014G163200 [exp]	0	1
AT3G21310			Core-2/I-branching beta-1,6-N-...		Potri.001G195900 [exp]	5.00	0.6670
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Potri.001G355800 [exp]	5.47	0.6476	Pt-CNX5.1
AT1G48430			Dihydroxyacetone kinase (.1)		Potri.012G041100 [exp]	8.83	0.6582
AT3G51980			ARM repeat superfamily protein...		Potri.001G072200 [exp]	10.67	0.6578
AT1G66430			pfkB-like carbohydrate kinase ...		Potri.004G089300 [exp]	12.00	0.6282
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.018G065800 [exp]	17.34	0.6369	ORG4.2
					Potri.001G241254 [exp]	22.84	0.5766
AT1G73820			Ssu72-like family protein (.1)		Potri.015G036600 [exp]	24.81	0.6056
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.004G042500 [exp]	27.34	0.6575
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.012G108600 [exp]	27.49	0.6392

Compare expression of checked genes

Potri.014G163200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.