Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62380 59 / 3e-09 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT2G24430 51 / 5e-07 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT3G10500 51 / 8e-07 NAC ANAC053 NAC domain containing protein 53 (.1) AT4G17980 50 / 1e-06 NAC ANAC071 NAC domain containing protein 71 (.1) AT4G36160 50 / 1e-06 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT5G08790 49 / 2e-06 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G63790 49 / 2e-06 NAC ANAC102 NAC domain containing protein 102 (.1) AT3G17730 49 / 2e-06 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G04410 49 / 3e-06 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT2G18060 48 / 6e-06 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058100 [exp] 501 / 8e-178 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G231300 [exp] 429 / 9e-150 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028300 [exp] 92 / 3e-20 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.015G002900 [exp] 88 / 8e-19 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G029200 [exp] 82 / 1e-17 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G028900 [exp] 82 / 3e-17 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.016G027900 [exp] 78 / 1e-15 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.019G063000 [exp] 71 / 5e-14 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G028700 [exp] 72 / 1e-13 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033676 [exp] 105 / 9e-25 AT3G10480 72 / 4e-13 NAC domain containing protein 50 (.1.2.3) Lus10010294 [exp] 83 / 3e-17 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1) Lus10014342 [exp] 74 / 5e-15 AT3G10490 51 / 5e-08 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10009858 [exp] 75 / 2e-14 AT5G62380 53 / 1e-07 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10024006 [exp] 73 / 1e-13 AT1G79580 75 / 3e-14 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10022965 [exp] 71 / 4e-13 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10025078 [exp] 70 / 9e-13 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10033279 [exp] 70 / 9e-13 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10019638 [exp] 64 / 2e-11 AT1G12260 59 / 4e-10 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10035400 [exp] 63 / 5e-11 AT1G79580 61 / 1e-10 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.014G163600.1 pacid=42763593 polypeptide=Potri.014G163600.1.p locus=Potri.014G163600 ID=Potri.014G163600.1.v4.1 annot-version=v4.1 ATGTCGTTACATAGCAGTAGGGTACAGTTTGTACCACAAAAACCAGAAACCCTAACCCCTGAACTACCTCATGGTTATCGTTTCCGTCCCGATGATGAAG AACTAGTCCGTTTCTATCTCTACCCTAGAATCACAAACCCTAAACTCTTCACCACCATCCATACTCCCATTAGAGATACCCATATCTTTGGCGACCAAGC CAAAGAACCTTGGCAAATCTGGGAATCCTTCCCCAAACGTCATGGCGAGGATCTCTTCTTCTTCACTCAACTCATCAAGAAAGGGAGGAACTTTGTGCGC AAAATTAGCTGCGGGCCTGGTACATGGCATCAAGAGTTCAAAGACCCTCCTTTCAATGTCTCCATCGACCCCGACTGCAAAGTCTCTGTCATCAGAAGGC TTTTCACTTACCAAAATCCGAAATCTGACCAGAATGGCTCCTGGTTCATGTTTGAGTACAGCCTGCCATCACTTTCTGAACAAATTGTCTTGTGTCGATT GAGAAAGAAAGAAGTCCACTCCACTGAGACAGTACAAACTACAACAACCGCAACAACTAAAAAGAGGAAGAGGGATGCTGACAGTGAAATTGTTGATGAT GCAACAAACACCATACCGCAAAAGCCCAGGATCGATGAATTAGATCAACATCAGCAACAGATTATGGGTTTCTATGTGGCCGTAGAAAACCAACAGCAGC ACTTGGAGCTTGAACCGGTCTTTGATAATTGGGCAGAATTCGACCATTCTGAGTGCATTTATTTTGAGAATGTGCAGGATCTTGAAAGTTATCTGATGGC TGATGATTCAGATATTACTTCCACGAGCAATGTTGCACCCGAACCAATTATATATGCATTTAATCCTACAGAGAACTTGCAGTCAATTGAGGTTGAGTGC GTCGAAAATGATGGGGAGGCTGCCTCAACACAGGATGATGATTTCTGTTTTAAGATGATTGATTTTAGTGGTGGATATGACGAGGCAGATGGGGTTCTAG CAAGTCAAGCAACAGCAGAGGCTAGTGTTTATTGGGTTCAGGCTACACCAGATCTGGATGGAACCTGCACTGCTGATGCTGTTGATTATGGTCTTGAACA TGGAGTTTGCGATTCAAGCCTCACCAATTGGTCTGGGTCATTTTCTCAAATGCTGCTAGAAGCAAATTACTTGCCTGATTGA
AA sequence Show only first row Show all	>Potri.014G163600.1 pacid=42763593 polypeptide=Potri.014G163600.1.p locus=Potri.014G163600 ID=Potri.014G163600.1.v4.1 annot-version=v4.1 MSLHSSRVQFVPQKPETLTPELPHGYRFRPDDEELVRFYLYPRITNPKLFTTIHTPIRDTHIFGDQAKEPWQIWESFPKRHGEDLFFFTQLIKKGRNFVR KISCGPGTWHQEFKDPPFNVSIDPDCKVSVIRRLFTYQNPKSDQNGSWFMFEYSLPSLSEQIVLCRLRKKEVHSTETVQTTTTATTKKRKRDADSEIVDD ATNTIPQKPRIDELDQHQQQIMGFYVAVENQQQHLELEPVFDNWAEFDHSECIYFENVQDLESYLMADDSDITSTSNVAPEPIIYAFNPTENLQSIEVEC VENDGEAASTQDDDFCFKMIDFSGGYDEADGVLASQATAEASVYWVQATPDLDGTCTADAVDYGLEHGVCDSSLTNWSGSFSQMLLEANYLPD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62380	NAC	ANAC101, VND6	VASCULAR-RELATED NAC-DOMAIN 6,...		Potri.014G163600 [exp]	0	1
					Potri.001G217950 [exp]	3.00	0.6663
AT4G20820			FAD-binding Berberine family p...		Potri.001G440700 [exp]	3.46	0.6431
					Potri.005G248925 [exp]	13.85	0.7046
					Potri.016G095001 [exp]	13.96	0.5805
AT5G20950			Glycosyl hydrolase family prot...		Potri.008G013700 [exp]	15.87	0.5820
AT4G34780			SAUR-like auxin-responsive pro...		Potri.017G052501 [exp]	25.74	0.5837
AT4G17690			Peroxidase superfamily protein...		Potri.012G076500 [exp]	30.29	0.5441
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.016G007200 [exp]	37.30	0.5953
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.008G077700 [exp]	47.11	0.5431	Pt-PNFT3.4
AT1G14200			RING/U-box superfamily protein...		Potri.011G119900 [exp]	58.68	0.5031

Compare expression of checked genes

Potri.014G163600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.