Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14103 79 / 3e-16 F-box/RNI-like superfamily protein (.1.2) AT2G42720 71 / 2e-13 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT1G06630 70 / 4e-13 F-box/RNI-like superfamily protein (.1.2.3) AT5G18780 69 / 9e-13 F-box/RNI-like superfamily protein (.1.2) AT1G58310 69 / 9e-13 F-box/RNI-like superfamily protein (.1) AT3G58920 68 / 1e-12 F-box/RNI-like superfamily protein (.1) AT3G59200 67 / 2e-12 F-box/RNI-like superfamily protein (.1) AT1G22000 67 / 3e-12 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT4G00315 67 / 4e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G69630 67 / 4e-12 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121400 [exp] 360 / 5e-123 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121500 [exp] 322 / 7e-108 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.010G134200 [exp] 79 / 2e-16 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.011G024600 [exp] 72 / 8e-14 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.002G132400 [exp] 64 / 4e-11 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G024300 [exp] 63 / 6e-11 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.014G039700 [exp] 59 / 1e-09 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 58 / 3e-09 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 57 / 8e-09 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034415 [exp] 72 / 4e-14 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 72 / 1e-13 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 67 / 3e-12 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 58 / 3e-09 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10034418 [exp] 57 / 6e-09 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1) Lus10013071 [exp] 57 / 8e-09 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10006342 [exp] 57 / 9e-09 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10029077 [exp] 56 / 1e-08 AT1G13570 82 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10004852 [exp] 56 / 1e-08 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10018509 [exp] 55 / 3e-08 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.014G163866.1 pacid=42762971 polypeptide=Potri.014G163866.1.p locus=Potri.014G163866 ID=Potri.014G163866.1.v4.1 annot-version=v4.1 ATGGCAAAAGACAATAGACGAAAACGTTACAAGAAAGCGAATAAAGATATGATTTGTAGATTGCCTAATGAGATTCTTGGTCATGTACTCTCGTTTCTTC CTATAAAAGATGCTGTGCGAACCAGCATTTTGTCCAAAAGTTGGAGAGAACTCTGGACATCACTTGCCAATTTTAATTTTGATGATCACATTCGGTGGCA ACTATCAGCAGAAAGAGAGACCACCTTTGGGGATTTCATGGATAGGTTTTGTTATCTTCATAACTCTCCTGAAAACTCTATTGCAAAATTTCATCTCAGA GACAATCTTGAGGAGCTTATACTATACACGTCTGATCATGTTCTGTTGCCTCGGAGAATTTTTAGTTGTGAGAAATTAGTGGCTTTGGACCTTAGTTATC GAATTGATATTGATCTTCTTGGGGTTGGTGTACGCTTTCCATGTCTCAAGGTCCTTCATCTTCAAGACCTCCTGATGCTTGATGATCATGCTTCCATAGA GAAACTATTAGCAGGTTCCCCGGTCCTTGAAGCACTGAAATTTGAACATGAAGATTGTGAATCCAGGAACGCCTTACGTATATGCTCAAGCTCACTGGAA CGCTTGATCATAAGATTTACATTTATTGCTTATTACGTGAAGGATCCTGGTTGTAGAGCACTAAAAGTGGTGTTTGCCTGGGCGGTGCAACCACCGCCTC TGTACTCACTGGTAGAGGCAGCTCTCCGTGTTGCTTATGAACATGTCTTCACCATACAAGTAGATGATTATATTGACATGACAGTTCAGTTTTTGAGACC GATCATGCCTATTGTCAAGAACTTACAATTGTGTGATTCTACTATGAGACGCTATCAGACACAGTTCATAAGAAGTTGCCTGGCTTTGACAATCTTCCTG ATTTCAGAATTTGACTCGTTTGGAGATTGA
AA sequence Show only first row Show all	>Potri.014G163866.1 pacid=42762971 polypeptide=Potri.014G163866.1.p locus=Potri.014G163866 ID=Potri.014G163866.1.v4.1 annot-version=v4.1 MAKDNRRKRYKKANKDMICRLPNEILGHVLSFLPIKDAVRTSILSKSWRELWTSLANFNFDDHIRWQLSAERETTFGDFMDRFCYLHNSPENSIAKFHLR DNLEELILYTSDHVLLPRRIFSCEKLVALDLSYRIDIDLLGVGVRFPCLKVLHLQDLLMLDDHASIEKLLAGSPVLEALKFEHEDCESRNALRICSSSLE RLIIRFTFIAYYVKDPGCRALKVVFAWAVQPPPLYSLVEAALRVAYEHVFTIQVDDYIDMTVQFLRPIMPIVKNLQLCDSTMRRYQTQFIRSCLALTIFL ISEFDSFGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14103			F-box/RNI-like superfamily pro...		Potri.014G163866 [exp]	0	1
AT1G06137			unknown protein		Potri.001G380300 [exp]	12.44	0.6677
AT1G32583			unknown protein		Potri.010G145501 [exp]	24.53	0.8553
AT1G63060			unknown protein		Potri.003G160700 [exp]	25.69	0.6288
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.009G048900 [exp]	35.91	0.8553
AT2G05920			Subtilase family protein (.1)		Potri.001G113533 [exp]	41.47	0.8553
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G177300 [exp]	42.49	0.8553
					Potri.014G045150 [exp]	45.43	0.8553
					Potri.019G036825 [exp]	46.36	0.8553
AT3G58610			ketol-acid reductoisomerase (....		Potri.019G089366 [exp]	47.28	0.8553
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.013G118200 [exp]	53.06	0.8493

Compare expression of checked genes

Potri.014G163866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.