Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48130 692 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 235 / 4e-68 Phototropic-responsive NPH3 family protein (.1) AT5G67440 229 / 2e-66 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT5G67385 229 / 3e-66 Phototropic-responsive NPH3 family protein (.1) AT4G31820 227 / 6e-66 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT2G47860 228 / 7e-66 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G03250 225 / 7e-65 Phototropic-responsive NPH3 family protein (.1) AT5G13600 224 / 1e-64 Phototropic-responsive NPH3 family protein (.1) AT1G03010 215 / 5e-61 Phototropic-responsive NPH3 family protein (.1) AT5G48800 214 / 8e-61 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357100 [exp] 248 / 3e-73 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 243 / 4e-71 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 241 / 2e-70 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 240 / 3e-70 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 239 / 3e-70 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G075400 [exp] 239 / 9e-70 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 236 / 7e-69 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 235 / 1e-68 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 236 / 3e-68 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001164 [exp] 799 / 0 AT5G48130 582 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10001738 [exp] 779 / 0 AT5G48130 577 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 244 / 3e-71 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 239 / 1e-69 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 239 / 2e-69 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 238 / 3e-69 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 235 / 2e-68 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 228 / 3e-66 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 225 / 5e-65 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 225 / 2e-64 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.014G164000.1 pacid=42764688 polypeptide=Potri.014G164000.1.p locus=Potri.014G164000 ID=Potri.014G164000.1.v4.1 annot-version=v4.1 ATGCCAATGGAAACTGCAAGCCCCAAAGATAGTTCATCAGCCTCAAGTCCTTTCTCTTCACCTAGCGTGACCGCCCTCTTAAAGATTAAGATCATTTCAT GGAGTCAAGAGACTGGTTTGCCTGTTTCTGTTCGAGTTCGAGTTGGTGAGAGAACATTCCACCTTCACAGGAACCCCTTATTTTCAAAGAGTGGATACTT CAAGAGACGATTGATCGAAACAACTCAGCTTGAGCTGCCACAGAGTTTCCCTGGAGGACCAGAAACCTTTGAGATGATTGCTTTATTCATGTATGGCTCT TCCACGTTGATTGACCCTTTTAATGTAGCAGCCCTGCGATGTGCAGCAGAGTTCCTTGAAATGACAGAAGAATTCTGCTCTGGCAATCTTTGTGAGCGTT TTGATCTCTATTTAAACCAAGTCGTCTTACAAAATTGGGATGATACCTTGATCGTTCTCCAAAGGTGCCAAACATTTATTCCATGGTCTGAAGAGCTGCT GATTGTTAGCCGCTGCATCGAATCCCTAGCCTTCATGGCTTGCATGGAGATTCTTGACCCTGAGAGGAGAAGAGACAGACCAGTTGTTACACTGGAGGCA TTGGCTGGTCAAGCTTGGAGCTGTGAAGCCGCCAATGAGATACTGAGCCAGGAGCTTTGGATCAAAGACCTCATTGCTCTACCATTTGGATTCTTCAAAA GGATAATAGGATCCTTGAGGAGGCAAGGAATGAAAGAAAAATATGTGAGCCCCATCGTTGTCTTCTATGCAAACAAATGGGTACTCTCTAAGAAGACGAT ACAATACTGGGAGAGCTCTGGTGAGAGAACTAGCGATGCCAACGCAAATGATAAAGTTTCAACGATACTACAAGGCGTACTTGATTTACTGCCAATGAGA GAGAAGGCCAGTAGAGTGATTCCTGTTGGATTTTACTTTGCTTTGCTTTCCAGATCCATTGGCATTGGTTTGAGAAATGACAGCAAGGTAAAGTTGCAAG ATCAGATTGCATCTCTTTTACACTTTGCGCAAGTGGAAGATTTACTCATTCCAAGCAGCAGAGTCGACTCGGATTGTTCCAGCATGGAGTTAGCTACGAT GGAGAGCATATTTTCAACAAATGTATCGTTGAACATGGACACAAACAATGCTCCTTCAGCTAGTAACTCAACTGTAGCAGAACTATGGGATACATTTCTC TCCCATATAGCTTCTGATCCCAAAATGAGGCCTAAAAGATTCATGGAACTCATTGAAACTGTACCAATATCTTGCAGACAGAGCCATGATCAACTGTACA GAGCAATGAACACTTTCCTGCAGACACACCTAGACATATCCCAAGAAGAAAAGGGGGCAGTTTGCAAGTACCTCAACTGCCAAAAACTGTCACAGTGGGC ATGCATTGACGCAGTTCAAAATGAGATGATGCCATTACGTTTGATTGTCCAGGCTCTTTTTGTACAACAACTGAATACGCACCAAGCGTTCAAAGAATGC TCGGACTCGTTTAGGTATGCACAAAGTGGAGAGTTCTCTGGGAGTCTTCCAAGCTCAAGATGCCCGAACACCAAAAGCCAATATCTAGCAGACAGCCCAT ATATGGATGGAGCAGAGCCAGGTAGTAGAACATTGAGTTTCTTGCTACAAAAAGACATTGCAGTACAACGATGTGAGTTCTCTAGAAAAGAATACGAGTC CACAAGCTTTAGAATTCAGAACCTTGAACAAGAGCTGTTTTCCTTGAAGAAGAGCCTTCAATTGCAAAAAACTTCGAAGAGAACAGAAACACTGCCAACC AAGCCACAGAGCACAAAACCGTATGGCTTGCAAAGCAGATCACTAAGCAAGAATAGGAACCCACTTGGGCATGTTACAGGTTGCGTTGGTTCTGTGAATT TCGCTTCACAAAGAAAATATGCTTGCAAGCTACTGAAGATCTTTCGCCGGATTACCTTGTTTGGAAGTAGAAAATCCAACAGAAAGCCAGGCGTCTCCAG CCTCTGGGGCAAACCGATGTAG
AA sequence Show only first row Show all	>Potri.014G164000.1 pacid=42764688 polypeptide=Potri.014G164000.1.p locus=Potri.014G164000 ID=Potri.014G164000.1.v4.1 annot-version=v4.1 MPMETASPKDSSSASSPFSSPSVTALLKIKIISWSQETGLPVSVRVRVGERTFHLHRNPLFSKSGYFKRRLIETTQLELPQSFPGGPETFEMIALFMYGS STLIDPFNVAALRCAAEFLEMTEEFCSGNLCERFDLYLNQVVLQNWDDTLIVLQRCQTFIPWSEELLIVSRCIESLAFMACMEILDPERRRDRPVVTLEA LAGQAWSCEAANEILSQELWIKDLIALPFGFFKRIIGSLRRQGMKEKYVSPIVVFYANKWVLSKKTIQYWESSGERTSDANANDKVSTILQGVLDLLPMR EKASRVIPVGFYFALLSRSIGIGLRNDSKVKLQDQIASLLHFAQVEDLLIPSSRVDSDCSSMELATMESIFSTNVSLNMDTNNAPSASNSTVAELWDTFL SHIASDPKMRPKRFMELIETVPISCRQSHDQLYRAMNTFLQTHLDISQEEKGAVCKYLNCQKLSQWACIDAVQNEMMPLRLIVQALFVQQLNTHQAFKEC SDSFRYAQSGEFSGSLPSSRCPNTKSQYLADSPYMDGAEPGSRTLSFLLQKDIAVQRCEFSRKEYESTSFRIQNLEQELFSLKKSLQLQKTSKRTETLPT KPQSTKPYGLQSRSLSKNRNPLGHVTGCVGSVNFASQRKYACKLLKIFRRITLFGSRKSNRKPGVSSLWGKPM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	0	1
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.013G019600 [exp]	1.00	0.9530
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Potri.004G235700 [exp]	4.69	0.9067
AT2G42440	AS2		Lateral organ boundaries (LOB)...		Potri.002G041100 [exp]	5.09	0.9424
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G436800 [exp]	8.30	0.9400
AT4G24050			NAD(P)-binding Rossmann-fold s...		Potri.001G086900 [exp]	8.48	0.9292
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G035400 [exp]	9.48	0.9343
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023800 [exp]	10.00	0.8763
AT5G48060			C2 calcium/lipid-binding plant...		Potri.001G271400 [exp]	10.58	0.8733
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.005G027400 [exp]	11.22	0.9088
AT5G46060			Protein of unknown function, D...		Potri.001G372900 [exp]	11.74	0.8630

Compare expression of checked genes

Potri.014G164000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.