Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55560 466 / 5e-167 Protein kinase superfamily protein (.1) AT3G48260 380 / 4e-130 WNK3 with no lysine (K) kinase 3 (.1) AT3G04910 362 / 5e-121 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G28080 352 / 9e-120 WNK9 Protein kinase superfamily protein (.1.2) AT3G22420 344 / 2e-115 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT1G49160 340 / 3e-114 WNK7 Protein kinase superfamily protein (.1.2) AT3G18750 338 / 3e-113 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT5G58350 335 / 7e-112 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G51630 332 / 7e-111 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G41990 328 / 3e-109 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086700 [exp] 371 / 6e-126 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 368 / 1e-124 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.005G049800 [exp] 360 / 8e-120 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 357 / 2e-118 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 355 / 8e-118 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 345 / 9e-114 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.016G134600 [exp] 337 / 5e-112 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.005G057300 [exp] 337 / 2e-111 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2) Potri.013G155100 [exp] 333 / 9e-111 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001165 [exp] 531 / 0 AT5G55560 458 / 5e-164 Protein kinase superfamily protein (.1) Lus10001739 [exp] 523 / 0 AT5G55560 457 / 2e-163 Protein kinase superfamily protein (.1) Lus10016594 [exp] 468 / 4e-168 AT5G55560 465 / 8e-167 Protein kinase superfamily protein (.1) Lus10041947 [exp] 360 / 2e-121 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10020236 [exp] 361 / 1e-120 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10017318 [exp] 357 / 4e-120 AT5G41990 589 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10001789 [exp] 358 / 1e-119 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10017957 [exp] 360 / 8e-117 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10003215 [exp] 353 / 3e-116 AT5G41990 585 / 0.0 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) Lus10010547 [exp] 347 / 2e-115 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.014G164100.1 pacid=42763931 polypeptide=Potri.014G164100.1.p locus=Potri.014G164100 ID=Potri.014G164100.1.v4.1 annot-version=v4.1 ATGCCGGCGGCAAGAAGCAATACATCTGATAGAGACGATGAACCTTTCGTGGAGGTTGATCCGACCGGTCGGTTCGGACGGTACAATGATTTGCTAGGTG CAGGTGCAGTGAAGAAGGTATACAGGGCATTCGACCAACACGAAGGGATTGAGGTGGCTTGGAATCAGGTGCGGTTAAGAAATTTTATAGAGGATCCTGT GCTCATCAATCGGCTTCACTCCGAGGTTCAGTTACTCAGAACATTGAAGAACAAGTACATCATTGTTTGTTATAGTGTTTGGTTGGATGAAGAGGATACC TCCCTCAATTTTATTACTGAGGTTTGTACTTCTGGGAACTTGAGGGATTACAGGAAGAAACATCGCCATGTGTCTTTGAAAGCTTTGAAGAAGTGGTCTA AGCAAGTTCTTGAGGGGCTGGAATTTCTTCATACGCATGATCCTTGTGTCATTCATAGAGATTTGAATTGCAGTAACATATTCGTCAATGGAAACAGTGG TCAGGTGAAAATTGGGGATCTGGGGTTTGCAACAATAGTGGGGAAAAGCCATACTGCACATTCGATACTAGGCACCCCAGAGTTTATGGCACCGGAACTC TATGAAGAAGATTACACTGAAATGGTGGACATTTACTCTTTCGGAATGTGTTTGCTTGAAATGGTGACGATGGAGATACCATACAGTGAATGTGATAATG TTGCCAAGATATACAAGAAGGTTACCTCTGGAGTAAAGCCTCAAGCTTTGAACAAGGTGGCTGATCCTGAAGTCAAGGCTTTTATATTGAAGTGTATAGC TGAGCCAAGAGCAAGACCTTCAGCTTCCGATCTTCTCAAGGACACCTTCTTTTCTGAGGTCAATGACGATGAAACTGTACCAGCCACCGCTTGA
AA sequence Show only first row Show all	>Potri.014G164100.1 pacid=42763931 polypeptide=Potri.014G164100.1.p locus=Potri.014G164100 ID=Potri.014G164100.1.v4.1 annot-version=v4.1 MPAARSNTSDRDDEPFVEVDPTGRFGRYNDLLGAGAVKKVYRAFDQHEGIEVAWNQVRLRNFIEDPVLINRLHSEVQLLRTLKNKYIIVCYSVWLDEEDT SLNFITEVCTSGNLRDYRKKHRHVSLKALKKWSKQVLEGLEFLHTHDPCVIHRDLNCSNIFVNGNSGQVKIGDLGFATIVGKSHTAHSILGTPEFMAPEL YEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDNVAKIYKKVTSGVKPQALNKVADPEVKAFILKCIAEPRARPSASDLLKDTFFSEVNDDETVPATA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55560			Protein kinase superfamily pro...		Potri.014G164100 [exp]	0	1
					Potri.009G086000 [exp]	12.00	0.7410
					Potri.017G050200 [exp]	12.00	0.7367
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.009G059300 [exp]	13.34	0.7720
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Potri.001G167400 [exp]	16.61	0.6742
AT1G51060		HTA10	histone H2A 10 (.1)		Potri.001G415700 [exp]	30.98	0.7282	HTA903
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.014G140700 [exp]	33.46	0.7157
AT3G27030			unknown protein		Potri.015G098200 [exp]	36.00	0.7520
					Potri.002G213900 [exp]	37.06	0.6397
AT1G73040			Mannose-binding lectin superfa...		Potri.012G140001 [exp]	40.89	0.7393
AT1G29850			double-stranded DNA-binding fa...		Potri.001G352600 [exp]	55.25	0.6889

Compare expression of checked genes

Potri.014G164100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.