Plant FIBer expression Database

Potri.014G164200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07790 563 / 0 DGCR14-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G222100
[exp]
757 / 0 AT3G07790 609 / 0.0 DGCR14-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012321
[exp]
612 / 0 AT3G07790 652 / 0.0 DGCR14-related (.1)
Lus10006367
[exp]
610 / 0 AT3G07790 654 / 0.0 DGCR14-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09751 Es2 Nuclear protein Es2
Representative CDS sequence
>Potri.014G164200.1 pacid=42763662 polypeptide=Potri.014G164200.1.p locus=Potri.014G164200 ID=Potri.014G164200.1.v4.1 annot-version=v4.1
ATGCTGCTCTCTCCAGGGCACTCACCACGCCACCTTTCATCTCCGTCGCCATCTTCAAATCCCGAAAGGACCCTTCAAATCTCCTACAATGTCTCTTCAA
TCAACAACACCCCGATATATCCTAGAAAACGATCCACAGTTCTCGACGAGGACAGTTATGTGGCCGCTATCGAGAAAATCATCGAGCGCGACTTCTTCCC
TGATATCTCGAAGCTCCGTGACCGTTTTGATTGGCTGGAAGCTATGAAAACGGGGGACCCGATCCAAATTCGAGATGCCCAGTTGAAGATTATGGAGCGC
CGTGGCAAGATGGTAAAAAATATCCACTCCGATGGCAGCAATCGGGCTAGAAATCAAACCCAAACTCAAACCCCAGGTTCTGCTTTTATTGGTAATTTCA
CTCAATTTGATGAGTTTGATAGCCGAATGCAAACACCTAGCGTTGTTATGGATAGGGGATTATCTAGTAATGCAGAGTCTAGTGAGAATGAGAATGAAAA
TGAAAATGCTGTTGATGAGAATTTGGGTTTAGATGATTTTTTTAGGAGATATACGAGTGAGGATAATGACAGTTTTTCGAAGATATTAGAGAAAGGGAAT
AGGAAAAGGAAAGAGAGATATGGGCACTTCTTAGAAGGTGAAAAGAAGGATGTTAAATTGATTGGGGATGCAAAGAGGGATAGGATTACGGATGGTTTTG
GAACCTCCGATCAGCCTCCGAGCACATTGGAGGGGTGGAAGTACACGGCGAAGAATTTGCTAATGTATCATCCGGCAGATAGGGGTGAGGCTCCATTGAC
CGAGGAGGAACGGGCTGTGAGATTGAAGGGTTTGACTAGAGAAATTAACATGTCTAATACACGTTTTCATGGTAAAATGTTGGATACTAGGCCAAAAGAT
GATGGTGTTGTTGAGGTGATTTATACTCCAGTAGTTGGGGCTACTCCACTTCCCATGTATGGTAGAGATGGGGATAAGGCGAAGAAGTATGATTTGGAGG
ATTTAAGGAGGATGCCAGAGAGGCTTTATGTGGAAACAGGGAAGAAGGCAGATGATGGGTATAGTTTTGTTAGGACACCCTCACCAGCTCCTGGAGTTGA
CGAGTCGCCATTTATTACTTGGGGTGAGATTGAAGGGACACCATTGAGGTTGGAACCTGAAGATACTCCTATTGATATTGGCGGCGGTGGCAATGGGCTG
CATTTTAAAATTCCCAATCCACCTGCACGGGATGTGAAGGCCCATTCATTATTGAGGAAGGCTGCACGGAGGTTGAGGGAGAAGTCAAAGATGTTTCGAA
AACCACCTTTGCCCTCTCCAAGTAGAGGGGGGAGTGCTAGTCCAAGTGCACGGACACTTTCTCCTGCTGCGCAGAAGTTTGTGAGGAAGGCAATTTCTAG
GTCTTTGTCATCTGTAGATGAAACCCTCCGTGCCAGTTATAGAGGGGCAAGCCCTGGAGTTGGTACTCCTAAGAGTGGAAGGAGTATCTCGAGGTTTGGA
AGAGATGGGAGCATGGGTTCCAGGTCACCTTCTGTAAGGGAGAATTCTAATCCTCCTTGGTAA
AA sequence
>Potri.014G164200.1 pacid=42763662 polypeptide=Potri.014G164200.1.p locus=Potri.014G164200 ID=Potri.014G164200.1.v4.1 annot-version=v4.1
MLLSPGHSPRHLSSPSPSSNPERTLQISYNVSSINNTPIYPRKRSTVLDEDSYVAAIEKIIERDFFPDISKLRDRFDWLEAMKTGDPIQIRDAQLKIMER
RGKMVKNIHSDGSNRARNQTQTQTPGSAFIGNFTQFDEFDSRMQTPSVVMDRGLSSNAESSENENENENAVDENLGLDDFFRRYTSEDNDSFSKILEKGN
RKRKERYGHFLEGEKKDVKLIGDAKRDRITDGFGTSDQPPSTLEGWKYTAKNLLMYHPADRGEAPLTEEERAVRLKGLTREINMSNTRFHGKMLDTRPKD
DGVVEVIYTPVVGATPLPMYGRDGDKAKKYDLEDLRRMPERLYVETGKKADDGYSFVRTPSPAPGVDESPFITWGEIEGTPLRLEPEDTPIDIGGGGNGL
HFKIPNPPARDVKAHSLLRKAARRLREKSKMFRKPPLPSPSRGGSASPSARTLSPAAQKFVRKAISRSLSSVDETLRASYRGASPGVGTPKSGRSISRFG
RDGSMGSRSPSVRENSNPPW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G07790 DGCR14-related (.1) Potri.014G164200
[exp]
0 1
AT2G36220 unknown protein Potri.016G079500
[exp]
1.00 0.9295
AT1G46768 AP2_ERF RAP2.1 related to AP2 1 (.1) Potri.014G025200
[exp]
2.44 0.9135 DREB36,DREB1.2
AT3G57990 unknown protein Potri.006G191800
[exp]
2.64 0.8977
AT2G31305 INH3 inhibitor-3 (.1) Potri.005G067400
[exp]
3.74 0.9138
AT3G19950 RING/U-box superfamily protein... Potri.015G028400
[exp]
4.89 0.8999
AT1G61040 VIP5 vernalization independence 5, ... Potri.004G039500
[exp]
6.63 0.8832
AT4G34630 unknown protein Potri.009G121700
[exp]
6.70 0.8894
AT2G01410 NHL domain-containing protein ... Potri.006G111600
[exp]
8.77 0.8936
AT4G16430 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) ... Potri.002G042000
[exp]
9.00 0.8781
AT1G36370 SHM7 serine hydroxymethyltransferas... Potri.002G090200
[exp]
10.19 0.8922 SHMT4

Potri.014G164200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.