Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04880 279 / 7e-89 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G26640 261 / 1e-81 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 210 / 1e-61 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 209 / 1e-61 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 201 / 6e-59 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT4G26440 199 / 2e-57 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT5G07100 184 / 2e-55 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G30250 183 / 5e-53 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G37260 174 / 8e-50 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT3G01080 176 / 1e-49 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G221600 [exp] 572 / 0 AT2G04880 255 / 3e-81 zinc-dependent activator protein-1 (.1.2) Potri.011G087900 [exp] 268 / 2e-83 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 253 / 7e-78 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.019G123500 [exp] 218 / 4e-64 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 218 / 6e-64 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.013G086000 [exp] 219 / 1e-63 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G169300 [exp] 217 / 1e-62 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.016G128300 [exp] 210 / 2e-61 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.019G053900 [exp] 207 / 5e-61 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006368 [exp] 380 / 2e-127 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2) Lus10012322 [exp] 357 / 1e-119 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10016595 [exp] 266 / 2e-82 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 251 / 1e-78 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 254 / 1e-77 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10043167 [exp] 246 / 2e-75 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10020215 [exp] 224 / 1e-66 AT5G56270 276 / 3e-84 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10026838 [exp] 224 / 1e-65 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10001265 [exp] 215 / 2e-63 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 208 / 1e-60 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G164300.6 pacid=42764615 polypeptide=Potri.014G164300.6.p locus=Potri.014G164300 ID=Potri.014G164300.6.v4.1 annot-version=v4.1 ATGGTTTCTTCAGAGGAAGTTCCAGATGAAGTTTCTCCCAAGGAGTTGCAGAAAAGACAGAGCCTAGATGATGGTACTGACACAAAACCACAGACCCATG ATGTTGGAGGTGCTTCACAACAAGAAGGAATCCCTGCTTCATATGCCCCTGGGAAATCTTTGGAGAATAGTGGGGGGCGAATATCGGAGTTAGACAAAGA AGGAAGTGTTTCTTCTATAACACCGCGGAAGGTCTCACATACCCCTGGCAGTGATCTCCGTTCCTTGCAATCTGGTCAGGAAGGAAGGACTCCTATCATG CGGGAAAAAGTGTCAGAGGATGGATATCACTGGCGAAAATATGGGCAGAAATTTGTTAAAGGAAATGAATTTATACGGAGCTATTACAAATGTACACATC CAAGTTGTCAAGCGAAAAAGCAGTTGGAATGTTCACATGATGGGAAGCTTGCTGATATTGTTTACCTTGGTGAGCATGAGCATCCCAAACCTCAACATAA CCTCCCACAAGCTGTTGGTTGCGTCCTGTCCGTTGTTGAAGAAAAACCTGATCATCTTTTATTCACTGGTGTTGAAGAAAGTCATGAACCTCATCCGATT GAGTCAACAAATACCCCTCAGATCTCTTCTGTTACGTCCAGTGAGGATGTGAAACGTGTGCTATCAGAACCAAAAAGGATAAGGGATGAGGTTGATGTAG ATGATGATCAACGCTCAAAACGACGGAAGAAAAGTAGCTGTAATGACAGCTCTACTCCTGTAGATACACCAACTAGTGAGCCACGTCTTGTCATTCAAAC AAAAAGTGAGGTCGATATTGTCAGTGATGGGTATCGATGGCGTAAATATGGGCAGAAATTGGTAAAAGGCAATCCAAATCCCAGGAGCTACTACAGGTGT TCAAGTCCTGGATGTCCAGTAAAGAAACATGTAGAGAGGGCATCTCATGACCCAAAATTGGTTATAACCAGTTATGAGGGACAACATGATCACGATATGC CTCCTTCTAGGACTATTACTCATAACACAACTGGTCTCAACACTTGTACAACTACCATCCAGAATGGCGAGTTAGGTACAAAATCAGGAGAAAGCAATGC CATTTCCCTTGAAATGGTTGTGTATAATAGTTCAGATTCCAACATCAAATTGGAGGAGAAACTGAGTTCCGAGTCAAGAAATAAATGGAAAGAAAGTAAT TCAGGCCATGAAAGTAAATCATGTGAGCAGCAGACTGGCAACACAAATGCCACGAAAGTAAGTGGTGCTGCTAACCTTGATATTGTTGTTAATACCAATC CTGTATCAGCAGGTAGATCGACTGAGCAACATGATGGTGAGTCAAGAATTGAGCCAAAAGAGAACAGTGCTGCTTGTGGTGTCCATAATATTACCCCAGG TCCAGAGAGTAATCCAAATGAACAGAACGTACTAAATTCAGAGCCTGTCCAAAGCTAA
AA sequence Show only first row Show all	>Potri.014G164300.6 pacid=42764615 polypeptide=Potri.014G164300.6.p locus=Potri.014G164300 ID=Potri.014G164300.6.v4.1 annot-version=v4.1 MVSSEEVPDEVSPKELQKRQSLDDGTDTKPQTHDVGGASQQEGIPASYAPGKSLENSGGRISELDKEGSVSSITPRKVSHTPGSDLRSLQSGQEGRTPIM REKVSEDGYHWRKYGQKFVKGNEFIRSYYKCTHPSCQAKKQLECSHDGKLADIVYLGEHEHPKPQHNLPQAVGCVLSVVEEKPDHLLFTGVEESHEPHPI ESTNTPQISSVTSSEDVKRVLSEPKRIRDEVDVDDDQRSKRRKKSSCNDSSTPVDTPTSEPRLVIQTKSEVDIVSDGYRWRKYGQKLVKGNPNPRSYYRC SSPGCPVKKHVERASHDPKLVITSYEGQHDHDMPPSRTITHNTTGLNTCTTTIQNGELGTKSGESNAISLEMVVYNSSDSNIKLEEKLSSESRNKWKESN SGHESKSCEQQTGNTNATKVSGAANLDIVVNTNPVSAGRSTEQHDGESRIEPKENSAACGVHNITPGPESNPNEQNVLNSEPVQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	0	1
AT3G57990			unknown protein		Potri.016G046900 [exp]	1.00	0.9324
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.016G069700 [exp]	2.00	0.9195	Pt-BLH1.2
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Potri.001G169900 [exp]	3.46	0.9051
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.005G040600 [exp]	4.24	0.8938
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.006G203000 [exp]	4.47	0.9037
AT2G30880			Pleckstrin homology (PH) domai...		Potri.002G057300 [exp]	5.29	0.8799
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.005G051700 [exp]	6.24	0.8805
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	8.36	0.9009
AT3G58970		MRS2-4, MGT6	magnesium transporter 6 (.1)		Potri.006G081700 [exp]	9.00	0.8684
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.011G145450 [exp]	9.16	0.8833

Compare expression of checked genes

Potri.014G164300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.