Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35740 179 / 6e-60 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G04910 136 / 6e-43 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT3G13560 107 / 2e-28 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT1G29380 104 / 4e-28 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G29360 103 / 9e-27 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G11820 102 / 1e-26 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G13600 96 / 2e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G79480 97 / 4e-25 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT2G05790 97 / 8e-25 O-Glycosyl hydrolases family 17 protein (.1) AT5G67460 96 / 1e-24 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G016800 [exp] 177 / 5e-59 AT5G35740 156 / 1e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G078500 [exp] 106 / 8e-29 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 104 / 1e-28 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.003G218500 [exp] 105 / 1e-27 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.011G006100 [exp] 105 / 2e-27 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.001G006500 [exp] 104 / 3e-27 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G353400 [exp] 102 / 3e-27 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.017G055700 [exp] 97 / 2e-26 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.004G010500 [exp] 101 / 4e-26 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012324 [exp] 187 / 9e-63 AT5G35740 164 / 8e-54 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10001167 [exp] 172 / 5e-57 AT5G35740 150 / 3e-48 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10039059 [exp] 152 / 1e-48 AT5G35740 157 / 3e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10038801 [exp] 143 / 3e-45 AT5G35740 146 / 1e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10001740 [exp] 124 / 4e-38 AT5G35740 111 / 2e-33 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004546 [exp] 108 / 9e-30 AT1G29380 175 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004600 [exp] 108 / 2e-29 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10007342 [exp] 102 / 2e-27 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 101 / 2e-27 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10015259 [exp] 101 / 3e-27 AT1G29380 143 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.014G164600.2 pacid=42763424 polypeptide=Potri.014G164600.2.p locus=Potri.014G164600 ID=Potri.014G164600.2.v4.1 annot-version=v4.1 ATGCCAATCCTTTGGAAAAGGACAATGCTAGCCCTTCTTATCCTGTCCATAGCTCCTAGGAAATCAGATGGGGAGTTAGAGCAATGGTGCATAGCAGATG AGCAGACCCCAGATGATGAGTTGCAGATAGCATTGGACTGGGCTTGTGGGAAAGGTGGTGCAGACTGCAGTAAGATTCAAGTGAACCAGCCTTGCTATTT GCCAAATACTGTGAGAGACCATGCTTCCTATGCCTTCAACAACTACTTCCAGAAGTTCAAGCACAAAGGTGGATCTTGCTACTTCAAAGGAGCTGCTATC ATTACAGAACTTGACCCCAGTCATAGCTCTTGCCAGTACGAGTTCCATCCCTGA
AA sequence Show only first row Show all	>Potri.014G164600.2 pacid=42763424 polypeptide=Potri.014G164600.2.p locus=Potri.014G164600 ID=Potri.014G164600.2.v4.1 annot-version=v4.1 MPILWKRTMLALLILSIAPRKSDGELEQWCIADEQTPDDELQIALDWACGKGGADCSKIQVNQPCYLPNTVRDHASYAFNNYFQKFKHKGGSCYFKGAAI ITELDPSHSSCQYEFHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35740			Carbohydrate-binding X8 domain...		Potri.014G164600 [exp]	0	1
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	3.16	0.8272	FAH1.2
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	4.79	0.8371
AT1G24620			EF hand calcium-binding protei...		Potri.010G107100 [exp]	5.47	0.8124
AT5G39240			unknown protein		Potri.017G093000 [exp]	6.00	0.8069
AT5G13100			unknown protein		Potri.003G168300 [exp]	9.48	0.7566
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	15.87	0.7811
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	16.73	0.7781
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	24.67	0.7412
AT4G30320			CAP (Cysteine-rich secretory p...		Potri.006G171300 [exp]	24.81	0.7570
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	25.09	0.8050

Compare expression of checked genes

Potri.014G164600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.