Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07770 1182 / 0 Hsp89.1, AtHsp90-6 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) AT2G04030 996 / 0 Hsp88.1, AtHsp90.5, HSP90.5, CR88, EMB1956 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) AT5G52640 568 / 0 AtHsp90-1, ATHS83, ATHSP90.1, HSP83, HSP81-1 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) AT4G24190 563 / 0 AtHsp90-7, HSP90.7, SHD SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) AT5G56030 560 / 0 AtHsp90.2, HSP90.2, ERD8, HSP81-2 HEAT SHOCK PROTEIN 90.2, EARLY-RESPONSIVE TO DEHYDRATION 8, HEAT SHOCK PROTEIN 90.2, heat shock protein 81-2 (.1.2) AT5G56010 560 / 0 AtHsp90-3, HSP81-3 HEAT SHOCK PROTEIN 90-3, heat shock protein 81-3 (.1) AT5G56000 560 / 0 Hsp81.4, AtHsp90.4 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136800 [exp] 990 / 0 AT2G04030 1232 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.008G112700 [exp] 989 / 0 AT2G04030 1201 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.017G146600 [exp] 580 / 0 AT5G52640 1174 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.005G241100 [exp] 561 / 0 AT4G24190 1227 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Potri.016G003400 [exp] 554 / 0 AT5G56000 1148 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.001G286700 [exp] 551 / 0 AT5G56000 1118 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.006G002800 [exp] 550 / 0 AT5G56000 1115 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.001G466000 [exp] 545 / 0 AT5G56000 1132 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.004G073600 [exp] 503 / 3e-169 AT5G52640 1021 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006374 [exp] 1201 / 0 AT3G07770 1199 / 0.0 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) Lus10012329 [exp] 1193 / 0 AT3G07770 1198 / 0.0 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) Lus10036843 [exp] 964 / 0 AT2G04030 1278 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Lus10019206 [exp] 964 / 0 AT2G04030 1283 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Lus10027303 [exp] 585 / 0 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027517 [exp] 582 / 0 AT5G52640 1230 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039008 [exp] 582 / 0 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039281 [exp] 575 / 0 AT5G52640 1226 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10038845 [exp] 555 / 0 AT5G52640 1175 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10014964 [exp] 553 / 0 AT5G52640 1177 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00183 [poplar] [flax] HSP90 Hsp90 protein CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.014G164900.1 pacid=42763036 polypeptide=Potri.014G164900.1.p locus=Potri.014G164900 ID=Potri.014G164900.1.v4.1 annot-version=v4.1 ATGCACAGACTATCGAGGCGTTCCGTCTCCACTATCCTCCGCTCCACTGGCTCTGCCTCTCGTTACGGGAGCGCCGCCACCGCTGTCCCATTCTCCGATT ATGTTGTCGACGGTGAGGCCAAATTCAGATGGTACTCGGTTTTAACCACTGGGAGAGAGATACCAAATAAAACCAAGCAGCTGAACTTGAAGCATACCTT TTTTTTGGGTACCCGTTACGAGTCTACGGCTGCAGAATCTGATTCGTCATCATCCCCTCCATCTGTGGGTGAAAAATATGAGTATCAAGCTGAGGTTAGT CGCCTTATGGACCTCATTGTTAATAGTCTATACAGCAACAAAGAGGTGTTTCTTCGGGAGCTTATCAGTAATGCGAGTGATGCCTTGGACAAACTGCGAT TTCTTAGTGTCACTGACTCTGAGCTTTTGAAGGATGCTACTGATCTTGACATTCGTATTCAAACTGATAAAGATAATGGGATTATAACTATCATTGATAG TGGCATTGGTATGACTCGTCAAGAACTTATTGATTGTCTTGGAACTATCGCACAAAGTGGAACTGCAAAGTTTTTGAAGGCATTGAAGGATAGCAAGGAT GCTGGTGCTGACAACAATTTAATTGGGCAATTTGGTGTGGGCTTTTATTCAGCTTTTCTCGTGGCAGATCGGGTTGTTGTCTCAACAAAAAGCCCACGAT CTGATAAACAATATGTATGGGAAGGAGAGGCCAATGCAAGCTCATATACTATAAGAGAGGACACAGACCCAGAAAATCACATTCCTAGGGGAACTCGCCT TACACTGTATCTTAAGCGTGATGACAAAGGCTTTGCACATCCAGAACGGATCCAGAAGCTTGTGAAAAACTACTCACAGTTTGTTTCATTCCCAATATAC ACCTGGCAGGAGAAAGGATACACTAAAGAGGTTGAGGTTGATGAGGATCCAGCTGAGGCCAAAAAGGATGAACAAGACGATACCACTGAGAAGAAGAAGA AGAAAACAAAAACTGTTGTTGAGAAATACTGGGACTGGGAACTTACTAATGAGACCCAACCAATATGGCTTCGGAACCCTAAAGAAGTTTCTACAGAAGA TTACAATGAGTTTTACAAGAAAACCTTTAATGAATACTTGGAGCCTTTAGCGTCTTCTCATTTCACAACTGAGGGTGAGGTGGAGTTCAGGTCCATACTT TATGTGCCAGCCATTGCTTCCACAGGAAAGGATGACATAGTCAATCCCAAAACAAAAAATATCAGGCTCTATGTAAAAAGGGTCTTCATTTCAGATGATT TTGATGGAGAACTGTTCCCACGATATCTAAGCTTCGTGAAAGGTGTTGTGGACTCCAATGACCTCCCCCTCAATGTTTCTCGCGAGATTCTTCAAGAAAG TCGCATTGTGCGGATTATGAGGAAACGCTTGGTTCGAAAGGCATTTGACATGATTTTGGGCATTTCCATGAGTGAGAATAGAGAAGATTATGAGAAGTTC TGGGATAACTTTGGCAAACACTTAAAATTGGGTTGCATTGAGGATCGTGAAAACCACAAGCGTATTGCACCACTGCTCCGATTTTTTTCTTCCCAGAGTG AGCAGGAGATGATTAGCTTGGATGAGTACGTGGAAAACATGAAACCTGAGCAGAAGGATATCTATTACATAGCTTCTGACAGTGTAACCAGCGCTAGGAA CACGCCTTTCTTAGAGAGACTCCTTGAGAAGGATCTTGAAGTGCTGTTCTTGGTTGATCCCATTGATGAAATTGCCATCCAGAACCTGAAATCATACAAG GAGAAAAATTTTGTTGACATCACCAAGGAAGACTTGGATTTAGGTGACAAGAACGAGGAGAAAGAGAAGAACATGAAGCAGGAGTTTGGCCAAACTTGTG ATTGGATTAAGAAGCGCTTGGGTGACAAAGTTGCCAGTGTACAAATATCAAATCGCTTGAGCTCGTCACCCTGTGTCCTTGTGTCTGGGAAATTTGGTTG GTCCGCGAACATGGAGAGGCTAATGAAGTCACAAACAGTTGGTGATATGTCCAGCTTGGAGTTCATGAGAGGCAGAAGGGTGTTTGAGATCAATCCTGAA CATGAAATAATTAAGAACTTAACTGCTGCATGCAGGAGCAACCAGGATGATGAAGATGCCCTAAGAGCTGTAGATCTCCTTTACGATGCAGCTTTGGTTT CCAGTGGATATACTCCTGAGGATCCAGCACAGCTGGGTGGGAAGATTTATGAGATGATGGGTATGGCGCTATCAGGGAAATGGTCAAGTCCTCCTGAGAT TCAGCATCCTGTATCTTCTCAACCAGGTATCCCAGAAACATTAGAAGCAGAGGTGGTTGAGCCGGTTGAAGTTGATGGGCAGAAGTGA
AA sequence Show only first row Show all	>Potri.014G164900.1 pacid=42763036 polypeptide=Potri.014G164900.1.p locus=Potri.014G164900 ID=Potri.014G164900.1.v4.1 annot-version=v4.1 MHRLSRRSVSTILRSTGSASRYGSAATAVPFSDYVVDGEAKFRWYSVLTTGREIPNKTKQLNLKHTFFLGTRYESTAAESDSSSSPPSVGEKYEYQAEVS RLMDLIVNSLYSNKEVFLRELISNASDALDKLRFLSVTDSELLKDATDLDIRIQTDKDNGIITIIDSGIGMTRQELIDCLGTIAQSGTAKFLKALKDSKD AGADNNLIGQFGVGFYSAFLVADRVVVSTKSPRSDKQYVWEGEANASSYTIREDTDPENHIPRGTRLTLYLKRDDKGFAHPERIQKLVKNYSQFVSFPIY TWQEKGYTKEVEVDEDPAEAKKDEQDDTTEKKKKKTKTVVEKYWDWELTNETQPIWLRNPKEVSTEDYNEFYKKTFNEYLEPLASSHFTTEGEVEFRSIL YVPAIASTGKDDIVNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENREDYEKF WDNFGKHLKLGCIEDRENHKRIAPLLRFFSSQSEQEMISLDEYVENMKPEQKDIYYIASDSVTSARNTPFLERLLEKDLEVLFLVDPIDEIAIQNLKSYK EKNFVDITKEDLDLGDKNEEKEKNMKQEFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSGKFGWSANMERLMKSQTVGDMSSLEFMRGRRVFEINPE HEIIKNLTAACRSNQDDEDALRAVDLLYDAALVSSGYTPEDPAQLGGKIYEMMGMALSGKWSSPPEIQHPVSSQPGIPETLEAEVVEPVEVDGQK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Potri.014G164900 [exp]	0	1
AT5G66960			Prolyl oligopeptidase family p...		Potri.007G035900 [exp]	1.00	0.9072
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.009G156500 [exp]	2.44	0.9044
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.002G032700 [exp]	8.71	0.8888
AT3G24100			Uncharacterised protein family...		Potri.014G056600 [exp]	9.79	0.8577
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.001G466066 [exp]	11.48	0.8386
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	11.83	0.8220
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.002G117200 [exp]	12.48	0.8386
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.005G051800 [exp]	12.68	0.8185
AT5G63830			HIT-type Zinc finger family pr...		Potri.003G145100 [exp]	13.52	0.8901
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.001G184200 [exp]	13.60	0.8676

Compare expression of checked genes

Potri.014G164900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.