Plant FIBer expression Database

Pt-ATVPS11.1 (Potri.014G165400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-ATVPS11.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G05170 1550 / 0 ATVPS11 vacuolar protein sorting 11 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006378
[exp]
1658 / 0 AT2G05170 1560 / 0.0 vacuolar protein sorting 11 (.1)
Lus10012332
[exp]
1290 / 0 AT2G05170 1196 / 0.0 vacuolar protein sorting 11 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF00637 Clathrin Region in Clathrin and VPS
CL0020 PF12451 VPS11_C Vacuolar protein sorting protein 11 C terminal
CL0229 RING PF17122 zf-C3H2C3 Zinc-finger
Representative CDS sequence
>Potri.014G165400.1 pacid=42764671 polypeptide=Potri.014G165400.1.p locus=Potri.014G165400 ID=Potri.014G165400.1.v4.1 annot-version=v4.1
ATGTATCAGTGGAGAAAATTCGAGTTCTTCGAGGAGAAATACGGAGGAAAGAGCTCCATTCCCGAGGATGTGACGGCAGGGAAGATCGAGTGCTGTTCTA
GCGGCAGAGGGAAGGTGGTGATCGGCTGCGATGATGGCACTGTAAGCTTGCTGGATCGTGGCCTCAAGTTCAATTTCTCTTTCCAATCTCACTCCTCCTC
TGTCCTCTTCCTCCAACACCTCAAGCAAAGGAACTTTTTGGTGACTGTGGGTGAGGATGAACAAATATCTCCGCAGCAATCTGCCATGTGCCTCAAAGTA
TTTGATCTCGACAAGATGCAATCCGAAGGCACGAGTGCTGCTACTACCCCTGATTGTATTGGAATATTGCGGATTTTCACCAATCAATTTCCCGAAGCAA
ATATTACTTCTTTTTTAGTACTAGAGGAAGCTCCTCCGATACTACTCATGGCTATTGGTTTAGACAATGGTTGCATTTACTGCATCAAAGGGGATATTGC
GAGGGAACGAATCACGCGGTTCAAGCTCCAAGTGGATAATGTTTCTGATAAAAGTCATTCAACGATTACAGGTCTTGGATTCAGAGTGGATGGTCAAGCC
CTTCAATTATTTGCCGTGACTCCAGATTCCGTGAGCTTGTTCAGCATGCATAATCAACCACCCAGGAGACAAACCTTAGATCAGATTGGATGTAATTTCA
ATAGTGTTACGATGAGTGATCGTTTGGAGTTAATAATTGGCCGGCCCGAGGCTGTGTATTTTTACGAAGTTGATGGACGTGGTCCTTGTTGGGCATTTGA
GGGAGAGAAGAAATTTCTAGGGTGGTTTCGTGGTTACCTTTTATGTGTTATTGCAGACCAAAGGACTGGGAAAGACACTTTCAATGTTTATGACCTGAAG
AACCGTTTGATAGCCCACAGTCTGGTGGTTAAAGAAGTTTCTCACATGCTGTGTGAATGGGGTAACATTATACTTATAATGACTGACAAATCAACTCTGT
GTATCGGGGAAAAGGATATGGAAAGCAAGCTAGACATGCTCTTCAAGAAGAATCTGTATACTGTAGCTATCAATCTAGTTCAGAGTCAGCAAGCTGATGC
TGCTGCTACTGCAGAAGTTCTAAGGAAGTATGGAGATCATCTATATAGCAAGCAAGATTATGATGAGGCCATGGCACAGTACATCTCCACTATTGGTCAC
CTTGAACCTTCATATGTGATACAGAAGTTTCTGGATGCACAGAGAATATACAACCTTACTAGTTACTTGGAAAAATTACATGAGAAGGGGCTTGCTTCTA
AAGATCATACAACCTTGCTCTTAAACTGCTATACCAAATTGAAAGATGTTGAGAAGCTTAATGTATTTATTAAAAGTGAAGATGGTGCTGGAGAACATAA
GTTTGATGTGGAGACTGCAATAAGGGTCTGTCGTGCTGCCAATTACCATGAGCATGCAATGTATGTCGCCAAGAAGGCAGGGAGGCATGAACTGTACTTG
AAGATCTTACTTGAAGACCTTGGCAGATATGGGGAAGCCTTGCAGTATATTTCAAGTCTTGAACCAAGTCAGGCTGGTGTGACTGTGAAGGAGTATGGTA
AAATTCTCATAGAGCACAAGCCAGTGAAGACAATCGAGATACTCATGAGGCTTTGCACCGAGGATGGAGAATCAACAAAGAGAGAATCCTCAAGTAGCAC
ATACTTAACTATGCTGCCATCTCCTGTTGATTTTCTCAACATTTTCATCCATCATCCACCGTCCCTCATGGACTTTCTTGAAAAATATACGGACAAGGTG
AAGGACTCACCTGCACAAGTAGAAATTCACAATACCCTCCTGGAGTTATACTTGTCAAATGACTTGAACTTCCCATCTATCTCACAAGCTAGTAATGGTG
TAGATCACACTCTTAAAGCAAGATCAGGTTCATTGGTAATGCCCAAAGCAGAATCCAAATTGAAATCAAGCGCTGATCGCAAAGATACATCTAAGGAAAG
AGATCGTATGGAAAGGTGTGAGAAGGGTCTGCGTCTGCTTAAGAGTGCGTGGCCATCTGACCTGGAGCAGCCACTTTATGATGTTGATCTTGCCATAATT
CTCTGTGAGATGAATGCATTTAAAGATGGGCTTTTGTATCTGTATGAGAAGATGAAACTATATAAAGAGGTTATTGCCTGCTACATGCAATCCCAGGACC
ATGAAGGATTGATTGCATGCTGCAAAAAGCTGGGGGATTCTGGTAAGGGAGGAGATCCATCTCTTTGGGCAGATCTGCTGAAGTATTTTGGTGAACTTGG
AGAAGATTGCTCAAAGGAAGTGAAGGATGTTCTGACATATATTGAAAGGGATGACATCTTGCCTCCTATTATTGTTCTTCAGACACTGTCCAGGAATCCA
TGCCTTACGCTCTCTGTCATTAAGGATTATATTGCTCGGAAGCTTGAGCAGGAGTCAAAGCTGATTGAAGAAGATCGACGAGCTATTGAGAAGTATCAGG
AAGACACTTTGACAATGAGAAAAGAAATTCAGGATCTCAGGACAAATGCGAGGATATTTCAGCTCAGCAAGTGCACTGCTTGCACCTTCACCCTTGATCT
TCCTGCTGTCCATTTTATGTGCATGCATTCATTTCATCAGCGTTGCCTTGGCGATAATGAAAAAGAATGCCCTGAGTGTGCTCCTGAATACAGATCTGTT
CTTGAAACAAAAAGAAGCCTGGAGCAGAATTCTAAAGATCAAGATCGCTTTTTTCAGCAGGTGAAGAGTTCAAAGGATGGGTTTTCTGTGATTGCTGAGT
ATTTTGGAAAAGGGATCATTAGCAAAACCAGTAATGGATCCACAGGCACTGGCAGGACAGGTGACACATCTTCCAGCAGTGGCTTCTAA
AA sequence
>Potri.014G165400.1 pacid=42764671 polypeptide=Potri.014G165400.1.p locus=Potri.014G165400 ID=Potri.014G165400.1.v4.1 annot-version=v4.1
MYQWRKFEFFEEKYGGKSSIPEDVTAGKIECCSSGRGKVVIGCDDGTVSLLDRGLKFNFSFQSHSSSVLFLQHLKQRNFLVTVGEDEQISPQQSAMCLKV
FDLDKMQSEGTSAATTPDCIGILRIFTNQFPEANITSFLVLEEAPPILLMAIGLDNGCIYCIKGDIARERITRFKLQVDNVSDKSHSTITGLGFRVDGQA
LQLFAVTPDSVSLFSMHNQPPRRQTLDQIGCNFNSVTMSDRLELIIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWFRGYLLCVIADQRTGKDTFNVYDLK
NRLIAHSLVVKEVSHMLCEWGNIILIMTDKSTLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYISTIGH
LEPSYVIQKFLDAQRIYNLTSYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNVFIKSEDGAGEHKFDVETAIRVCRAANYHEHAMYVAKKAGRHELYL
KILLEDLGRYGEALQYISSLEPSQAGVTVKEYGKILIEHKPVKTIEILMRLCTEDGESTKRESSSSTYLTMLPSPVDFLNIFIHHPPSLMDFLEKYTDKV
KDSPAQVEIHNTLLELYLSNDLNFPSISQASNGVDHTLKARSGSLVMPKAESKLKSSADRKDTSKERDRMERCEKGLRLLKSAWPSDLEQPLYDVDLAII
LCEMNAFKDGLLYLYEKMKLYKEVIACYMQSQDHEGLIACCKKLGDSGKGGDPSLWADLLKYFGELGEDCSKEVKDVLTYIERDDILPPIIVLQTLSRNP
CLTLSVIKDYIARKLEQESKLIEEDRRAIEKYQEDTLTMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSV
LETKRSLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKTSNGSTGTGRTGDTSSSSGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G05170 ATVPS11 vacuolar protein sorting 11 (.... Potri.014G165400
[exp]
0 1 Pt-ATVPS11.1
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.008G224075
[exp]
1.73 0.8588
AT5G15070 Phosphoglycerate mutase-like f... Potri.004G129900
[exp]
6.32 0.7776
AT1G60890 Phosphatidylinositol-4-phospha... Potri.003G019100
[exp]
16.43 0.7461
AT2G01940 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOP... Potri.015G033100
[exp]
18.33 0.7156
AT5G38560 AtPERK8 proline-rich extensin-like rec... Potri.017G110400
[exp]
26.15 0.7511
AT1G34210 ATSERK2, SERK2 somatic embryogenesis receptor... Potri.019G087700
[exp]
28.49 0.7381 Pt-SERK2.3
AT4G02100 Heat shock protein DnaJ with t... Potri.002G197300
[exp]
32.07 0.7504
AT1G30760 FAD-binding Berberine family p... Potri.001G463550
[exp]
42.74 0.7247
AT5G16720 Protein of unknown function, D... Potri.004G087600
[exp]
43.63 0.7359
AT1G71440 TFCE, PFI TUBULIN-FOLDING COFACTOR E, tu... Potri.019G072700
[exp]
43.64 0.7366 Pt-PFI.1,TFCFE

Potri.014G165400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.