Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05160 513 / 1e-177 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) AT3G52980 398 / 6e-135 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G21100 148 / 3e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G51950 148 / 2e-38 C3HZnF Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) AT3G63450 145 / 3e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G12440 147 / 2e-37 C3HZnF CCCH-type zinc fingerfamily protein with RNA-binding domain (.1.2.3) AT1G51520 126 / 2e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G51530 72 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 45 / 0.0002 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G13224 43 / 0.0005 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G221100 [exp] 991 / 0 AT2G05160 469 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Potri.009G050700 [exp] 222 / 7e-64 AT3G51950 362 / 4e-117 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G255532 [exp] 217 / 5e-62 AT3G51950 347 / 8e-112 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.009G050600 [exp] 189 / 6e-52 AT3G21100 360 / 4e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G255400 [exp] 159 / 1e-41 AT3G21100 338 / 2e-107 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.003G204300 [exp] 158 / 5e-41 AT3G51950 342 / 1e-109 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G020300 [exp] 151 / 2e-38 AT3G51950 330 / 1e-104 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.003G040900 [exp] 49 / 7e-06 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G196500 [exp] 47 / 3e-05 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012333 [exp] 667 / 0 AT2G05160 488 / 2e-168 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10006379 [exp] 645 / 0 AT2G05160 467 / 1e-160 CCCH-type zinc fingerfamily protein with RNA-binding domain (.1) Lus10019044 [exp] 165 / 9e-44 AT3G51950 341 / 4e-110 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10005319 [exp] 159 / 7e-42 AT3G51950 420 / 2e-141 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10027351 [exp] 151 / 2e-41 AT3G21100 235 / 6e-77 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039575 [exp] 156 / 6e-41 AT3G51950 427 / 3e-144 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10019042 [exp] 156 / 9e-41 AT3G21100 368 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10005023 [exp] 155 / 2e-40 AT3G21100 380 / 4e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014915 [exp] 152 / 2e-39 AT3G21100 384 / 7e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10009964 [exp] 140 / 1e-36 AT3G51950 215 / 3e-64 Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0123 [poplar] [flax] HTH PF12872 [poplar] [flax] OST-HTH OST-HTH/LOTUS domain
Representative CDS sequence Show only first row Show all	>Potri.014G165500.9 pacid=42763324 polypeptide=Potri.014G165500.9.p locus=Potri.014G165500 ID=Potri.014G165500.9.v4.1 annot-version=v4.1 ATGGATTTTTCAGAGTCCACAAAGGTTGTGTACAATAGAATCCAGGAGATAGAGCCTGAATTCGTCGGCAAGATCATTGGCTATATTCTGTTACAAAACC ATGGTGAGAGAGAAATGATTCGGCTAGCCTTTAGCCCTGATAATTTGATTTACGCTACGATTAGCAAAGCCAAATCTGATCTGGGGCTAAACAAAACACC AGTTCCGAATCCAATTTCACCTTCTCAGGTGAACCCGGCACCTGTTTCAGATGTTCATCTGCAATTCATTCCTAACACAGCAGTTTCATCACACCCAATT TCCTCTCCAATAAAGATTAGGACTGCAGGTTCTTTCTGGGATGCCCAAGTAACTGGTGACCAGCAACAGGCGCACAACCTGGATTTTGGTCCACCAGGGT ACTCAGAAATGCTCCCTGAAGATTACCGGCTTCAAAACCAAATGCAGTTCTTGACTTCGGATGATCAGTTAGAGTTTGTTAATTCTGACTTTTCTAGCAG TTACTTTTACCCAGAACCAGCATTAGGTCCTAGGACTAGTAGAAGGTCTCCAAGCTTGCCTGAATTTCCTGTTAAGATTTGCCATTACTTCAATAAAGGG TTCTGCAAGCATGGGAACAACTGTAGGTATTTCCATGGCCATCCCATGCCAGAAAGCTTTTCTCAGATTCTCAGTCTGAATTCGAATGAGATTGCAAACG ATGAACATTTTATCTCACCTGGCTCTCTTGAAAAGCTTGAATTGGAGCTCACTGAGCTTTTGAAATCAAGAAGAGGGGTGCCAGTTTCAATTGCCTCTTT GCCAATGATGTATTATGAGAAGTATGGGAGGATGCTGCAGGCCGAGGGGTATCTTACGGAGAGCCAGAGACATGGCAAGGCAGGTTATAGTCTAACAAAG CTCCTAGCTCGATTGAAGAATAGCATTCGTCTCATTGACAGGCCTCATGGGCAGCATTCAGTGATTTTGACAGAAGATGTTCCAAAGTACTTGGAGTATG CTGGTGAGAGGAATGATCCCGGTGGAATTGTTGCTGGTTCTAGGCAGATCTATCTTACCTTTCCAGCTGAAAGTACCTTTACAGAGCAAGATGTTTCCAA CTATTTCAGCAAATTTGGGCCCGTTCAAGATGTTAGGATTCCATGCCAGCAGAAGAGGATGTTTGGATTTGTGACTTTTGTTTTTGCGGAGACTGTAAAG CAGATACTATCAAAGGGGAATCCTCATCATGTTTGTGGGGCTCGTGTTCTTGTGAAACCTTACAGGGAAAAATCAAGGCTTGTTGACAGGAAGTACGCTG AGAAAATACAGCACCCTTTCTTTTACAGCCAACACTTCATAGATGGAGATTCTGAGCTTCACTCTGTGCCGAGAGTTTGTGATAATTCAAGATTACTCAG GAAGCAGCTCATGGAGGAACATGAGCAGGCACTTGAACTTGAGAGAAGGCGTCTCTCTGAGTTTCAGCTTGCGCCTAAACCCCTGGCTCGTCATGCATAT CATGGCCACTCTATGGATGAGTTCAAGCTCTCAGAAGAACAAGCAGACCAGTTCCCATCTGCTGAGCATTTCAATTACTGGTTTGACGTTTTGAATAATG GTTCCACCAGCGAGGAAAAGCATAGGCATACAAGGACCAATTGCAGTGAGCAGGATAGCAACCAAGGAGTTAATCTTCCCGAGAGCCCGTTTGCATCTGC AATAGGGAAAGGCATTTCAACAGTTATATAG
AA sequence Show only first row Show all	>Potri.014G165500.9 pacid=42763324 polypeptide=Potri.014G165500.9.p locus=Potri.014G165500 ID=Potri.014G165500.9.v4.1 annot-version=v4.1 MDFSESTKVVYNRIQEIEPEFVGKIIGYILLQNHGEREMIRLAFSPDNLIYATISKAKSDLGLNKTPVPNPISPSQVNPAPVSDVHLQFIPNTAVSSHPI SSPIKIRTAGSFWDAQVTGDQQQAHNLDFGPPGYSEMLPEDYRLQNQMQFLTSDDQLEFVNSDFSSSYFYPEPALGPRTSRRSPSLPEFPVKICHYFNKG FCKHGNNCRYFHGHPMPESFSQILSLNSNEIANDEHFISPGSLEKLELELTELLKSRRGVPVSIASLPMMYYEKYGRMLQAEGYLTESQRHGKAGYSLTK LLARLKNSIRLIDRPHGQHSVILTEDVPKYLEYAGERNDPGGIVAGSRQIYLTFPAESTFTEQDVSNYFSKFGPVQDVRIPCQQKRMFGFVTFVFAETVK QILSKGNPHHVCGARVLVKPYREKSRLVDRKYAEKIQHPFFYSQHFIDGDSELHSVPRVCDNSRLLRKQLMEEHEQALELERRRLSEFQLAPKPLARHAY HGHSMDEFKLSEEQADQFPSAEHFNYWFDVLNNGSTSEEKHRHTRTNCSEQDSNQGVNLPESPFASAIGKGISTVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.014G165500 [exp]	0	1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G191900 [exp]	1.41	0.8846	Pt-GT2.2
AT3G14470			NB-ARC domain-containing disea...		Potri.007G137101 [exp]	6.70	0.8423
AT1G14900		HMGA	high mobility group A (.1)		Potri.017G129400 [exp]	7.21	0.7984	HMGA901
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	7.74	0.8369	ARR12.2
AT1G66920			Protein kinase superfamily pro...		Potri.015G018000 [exp]	10.58	0.8285
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	11.61	0.8363	ENOD8.2
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Potri.009G031300 [exp]	13.56	0.8284	APK1.1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	18.43	0.8231
AT4G31980			unknown protein		Potri.003G209500 [exp]	19.74	0.8361
AT5G59830			unknown protein		Potri.001G236000 [exp]	21.02	0.8166

Compare expression of checked genes

Potri.014G165500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.