Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05230 730 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 730 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 553 / 0 Domain of unknown function (DUF3444) (.1) AT5G53150 400 / 2e-129 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 207 / 7e-58 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 175 / 1e-47 unknown protein AT5G37380 155 / 4e-41 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT4G19570 157 / 6e-41 Chaperone DnaJ-domain superfamily protein (.1) AT5G18750 157 / 7e-40 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37440 147 / 1e-39 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G221000 [exp] 1284 / 0 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 511 / 5e-172 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 509 / 3e-171 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 484 / 1e-161 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 480 / 6e-160 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 469 / 2e-156 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 288 / 1e-86 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 183 / 2e-48 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G097800 [exp] 179 / 9e-48 AT2G35540 235 / 4e-69 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001744 [exp] 543 / 0 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 541 / 0 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10012334 [exp] 538 / 0 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10001171 [exp] 459 / 6e-157 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 457 / 4e-152 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 447 / 4e-148 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 281 / 3e-82 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 272 / 1e-81 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 272 / 2e-81 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 274 / 2e-79 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11926 [poplar] [flax] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Potri.014G165600.6 pacid=42763666 polypeptide=Potri.014G165600.6.p locus=Potri.014G165600 ID=Potri.014G165600.6.v4.1 annot-version=v4.1 ATGGAACCAAACACAGAGGAGGCTGTCATGGCAAAAGAGATTGCTGAGAAGCGATTTGCTGAAAGAGATTTTACTGGTGCAAAGAATTATGCTTTGAAGG CAAAAACTTTGTGTCCTGGATTAGAGGGTATATCTCAGATGGTGGCCACTTTTGAAGTTTATATTGCATCTCAGGCCAAATGCAATGGTGAAATTGACTA TTTCTCTGTTCTTGGATTGAAGCCTTCTGCAGATAAAGATGCAGTGAAAAGGCAGTATCGAAAGATGGCTGTGTTGCTCCATCCTGATAAGAATAAAACT GTGGGAGCTGATGGAGCATTTAAACTAGTATCTGAAGCATGGACTATGTTGTCAGATAGTCTTAAGAAAAACTCTTATGATGTAAAGAGAAACAAAAAGA TGGCATCTTGTGTTGTTCAGACAAACCTATCTTCAGTTCATGCTGCTGGGGTTACAGGATACAGCCATTGTTCCAATTCACCAACTGCTCACGGACTTGA TACTTTCTGGACAGTTTGCACCTCTTGCAAAGTTCAGTATGAGTATCTACGGAAGTATGTGAATAAGAGACTTTCTTGTAAGAACTGCCGGGGTACTTTC ATTGCTGTGGAAACTGGGGCAGCTCCAGTCAGTGGTTCTTTCCCCTACTGTCCTTGGTCATATGTCCCTGGTAATGGGCATAGAAGTCATGGATATGATG GGGTTGCATATGTCCCAACCACCTCTACCTTATACTCAGGAAATGGGGTCTCAGGATTGCATACTGGACATGGGTACGAGTATGTTTCAAATTTATCATT TCAATGGAGCTCATTTTCTGGAACTCCAGGGAGTGTTGTTGGTCCCAATGGATCATGTGCATTATCTGCTGATACTGTTTATCAGGCTAATGGAAGTGCC AGTGCAGCAAAGGTTAAACCAGCAGCCAATGGAAGGCGATCCATGAAAACTGCCACAGCAAAGATAAACTCTGATGTATCTGCAAGCTGTAACGAGTCTT CAGGCTCCAAGACTGGTAGACCTGATAAGAAAAGGAAGGTTGCTGTTGGATCCGGTTTTAGAAATGGGTGTGAAGAAAAAGAACCAAAGTCCGGTTCTGA AGTTGGATTAGCTAATGGATATAAAAATGTTGAGCATGATGCCAAGCTTTCCAGTCCAATTGAAGTTCCAACAAGACACAGCTCGATTGCTCCGGCTTTT GATGCTAGAAAGTTGTTGATTGACAAGGCAAGGACTGACATCAGGAAGAAATTGGAGGAGATGAGATTAGCTTCAGCTGCAGCAGTTAAAGAGAACATGG AAGATCAATCCACAGAGGCAGGAGAGGCTCCTAAACAAGCAAATTCAGATGTTGCTGGCCATCAAACAAAGTCAAACAAAATAGGGCCAATCTCGATAAC AGTCCCTGATCCTGATTTCCATGATTTTGACAAAGATAGAGCTGAGGAATGCTTCAAGCCAAAACAAATATGGGCATTGTATGATGAAGATGATGGTATG CCTCGCTTATACTGTTTGATTCGCCAGGTGGTCTCAGTTAAACCCTTTAAGATTCTCATCACTTACTTGAACTCTAAAACTGATGGTGAATTTGGGGCAG TGAATTGGATAGATTCTGGGTTTACTAAATCTTGTGGACACTTCAGAGCACAGAATTCTGATGTTGTTGATCAAGTGAACATTTTCTCTCATGTTTTGAA AGGTGAAAAGGCTGGTAGAGGTGGCTGTGTTCGGATATACCCCAAAAGTGGAGATGTTTGGGCTGTTTATCGAAACTGGTCACCTGATTGGAACATATCA ACCCCAGATGATGTGAGGCACCAGTATGAGATGGTAGAGGTCCTTGATAAGTACTCTGAAGAGCTTGGAGTTTGTGTTGCTCCTCTGAACAAGCTAGCTG GTTTCAAAACAGTATACCAAAGGAACGCAGGCAAGGATGCCATGAGATGGATTCCAAGAAGAGAGATGGTACGCTTTTCTCACCAGGTGCCTTCTTGGTC ACTTGAAGGAGAAGCTAGTAATTTGCCAGGAAAGTGTTGGGATCTGGACCCCGCCGCTACTCCAGACGAGCTACTTCATGCTGCAACAGAAGCGAAGGCT TAG
AA sequence Show only first row Show all	>Potri.014G165600.6 pacid=42763666 polypeptide=Potri.014G165600.6.p locus=Potri.014G165600 ID=Potri.014G165600.6.v4.1 annot-version=v4.1 MEPNTEEAVMAKEIAEKRFAERDFTGAKNYALKAKTLCPGLEGISQMVATFEVYIASQAKCNGEIDYFSVLGLKPSADKDAVKRQYRKMAVLLHPDKNKT VGADGAFKLVSEAWTMLSDSLKKNSYDVKRNKKMASCVVQTNLSSVHAAGVTGYSHCSNSPTAHGLDTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTF IAVETGAAPVSGSFPYCPWSYVPGNGHRSHGYDGVAYVPTTSTLYSGNGVSGLHTGHGYEYVSNLSFQWSSFSGTPGSVVGPNGSCALSADTVYQANGSA SAAKVKPAANGRRSMKTATAKINSDVSASCNESSGSKTGRPDKKRKVAVGSGFRNGCEEKEPKSGSEVGLANGYKNVEHDAKLSSPIEVPTRHSSIAPAF DARKLLIDKARTDIRKKLEEMRLASAAAVKENMEDQSTEAGEAPKQANSDVAGHQTKSNKIGPISITVPDPDFHDFDKDRAEECFKPKQIWALYDEDDGM PRLYCLIRQVVSVKPFKILITYLNSKTDGEFGAVNWIDSGFTKSCGHFRAQNSDVVDQVNIFSHVLKGEKAGRGGCVRIYPKSGDVWAVYRNWSPDWNIS TPDDVRHQYEMVEVLDKYSEELGVCVAPLNKLAGFKTVYQRNAGKDAMRWIPRREMVRFSHQVPSWSLEGEASNLPGKCWDLDPAATPDELLHAATEAKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.014G165600 [exp]	0	1
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	4.00	0.7381
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	7.34	0.7361
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	17.37	0.7364
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	19.10	0.7169
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.008G150500 [exp]	31.68	0.7187
AT1G28320		DEG15	protease-related (.1)		Potri.004G046900 [exp]	41.66	0.7113
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.009G073800 [exp]	43.12	0.6718
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	49.49	0.6977
					Potri.002G001250 [exp]	51.11	0.7034
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.013G099700 [exp]	53.38	0.7087	SGR2.1

Compare expression of checked genes

Potri.014G165600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.