Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26680 696 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05670 265 / 3e-80 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 248 / 6e-74 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 231 / 3e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 226 / 6e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09820 222 / 3e-65 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G02150 224 / 7e-65 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11710 210 / 2e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G38730 209 / 2e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 213 / 8e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105600 [exp] 261 / 9e-79 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 246 / 4e-73 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G147700 [exp] 238 / 1e-70 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G131400 [exp] 235 / 4e-70 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 234 / 1e-68 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G040200 [exp] 231 / 2e-66 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G071600 [exp] 226 / 2e-66 AT5G40400 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G045000 [exp] 222 / 5e-65 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 216 / 5e-63 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009548 [exp] 588 / 0 AT4G26680 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10020371 [exp] 262 / 4e-83 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027916 [exp] 249 / 5e-74 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 243 / 6e-72 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 242 / 4e-70 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 232 / 2e-68 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 221 / 1e-64 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10008185 [exp] 226 / 2e-64 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013077 [exp] 220 / 4e-64 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034421 [exp] 206 / 2e-58 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G166001.1 pacid=42762894 polypeptide=Potri.014G166001.1.p locus=Potri.014G166001 ID=Potri.014G166001.1.v4.1 annot-version=v4.1 ATGACAACTTGTTTACATCTCCGTCGATTTTCAACTTTCAATCGGAACAATCCAATCCCACACAGAACAATCCCTGAACCCAAAGGACAAGACCTTGATT TTGTTAACGTTGTACATAGTCATCTTATTCACTCTGATTGGGATAAGCTCAACAAATTATCCACCCATTTTACTCCCTTTAGAGTTAACCATATTCTTCT AAAGATCCAGAAAGATCATGTTCTTTCCCTTGAGTTCTTCAATTCTCTCAAAACTCTAAACCCCATATCCCTTACTCTCGAAACCCATTCCATTATTCTC CACATTCTTACCAAAAAGAGCAAGTTCAAGTCAGCACAATCCATTCTCAGAACCCTTCTTGCTTCCCGTTCCATTGATTTGCCTGGTAAGTTGTTTGATA CCCTTCTTTTTTCGTATCGAATGTGCGATTCTTCGCCGCGGGTTTTTGACTCGTTGTTTAAGACTTATGCTCATATGAACAAGTTTAGGAATGCTACTGA TGTTTTTTCTCGAATGAAAGATTATGGTTTCTTGCCTACTGTTGAGTCTTGCAATGCATATTTGAGTTCCTTGCTTGATTTTCATAGGGTGGATATTGCT TTGACGTTTTATAGAGAAATGCGTCGGTGTAGGATATCGCCGAATTCATACACTTTCAACCTGGTTTTGTCTGCCCTTTGCAAGTCTGGGAAACTTGAAA AGGCCGTTGAAGTGCTTAGGGAGATGGAGAGTGTGGGAATTACTCCTAATGTTGTGTCTTACAATACTCTGATTGCAGGGCATTGCAATAAGGGTCTTTT GAGCATAGCTACCAAGCTTAAGAACTTGATGGGGAAGAATGGTTTGGAACCGAATGTGGTTACTTTTAACTCTTTGATTCATGGGTTTTGCAAGGAAGGG AAACTGCATGAAGCAAATAGATTTTTTAGTGAGATGAAAGTTATGAATGTCACTCCTAATACTGTGACTTACAATACTTTGATAAATGGATATGGTCAAG TGGGTAATAGCAATATGGCTGGTAAGGTTTATGAAGAAATGATGAGAAATGGAGTTAAGGCTGACATATTGACTTATAATGCTTTGATTTTGGGGCTATG CAAAGAGGGTAAGACTAAGAAAGCTGCATTTCTTGTTAAAGAACTTGATAAAGAGAATTTAGTCCCCAATGCTTCGACCTATTCTGCTCTCATTAGTGGA CAGTGTGCAAGGAAGAACTCTGACCGTGCTTTTCAGCTGTACAAAAGCATGGTAAGGAGTGGTTGTCATCCAAATGAGCAAACTTTCAAGATGTTGACAT CTGCCTTTGTCAAGAATGAGGATTTTGAAGGAGCATTCAATGTCCTGATGGATATGTTTGCGAGGTCTATGGCTTCTGATTCAAATACCTTACTAGAAAT TTATGATGGGCTTTGCCAGTGTGGAAAAGAAAATTTGGCAATGAAGTTATGCCATGAGATGGAAGCAAGACGTCTAATTCCAGAAGGTTTTGACAGAGCT GAACCTTTCAATTCTATGACAGAGAAAGAGAACAGAACCTTTGGATAA
AA sequence Show only first row Show all	>Potri.014G166001.1 pacid=42762894 polypeptide=Potri.014G166001.1.p locus=Potri.014G166001 ID=Potri.014G166001.1.v4.1 annot-version=v4.1 MTTCLHLRRFSTFNRNNPIPHRTIPEPKGQDLDFVNVVHSHLIHSDWDKLNKLSTHFTPFRVNHILLKIQKDHVLSLEFFNSLKTLNPISLTLETHSIIL HILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTLLFSYRMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIA LTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEG KLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISG QCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNTLLEIYDGLCQCGKENLAMKLCHEMEARRLIPEGFDRA EPFNSMTEKENRTFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26680			Tetratricopeptide repeat (TPR)...		Potri.014G166001 [exp]	0	1
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.009G041700 [exp]	1.00	0.7748
AT4G30230			unknown protein		Potri.006G168400 [exp]	10.90	0.7294
AT1G56190			Phosphoglycerate kinase family...		Potri.016G091800 [exp]	16.88	0.7393
AT4G03200			catalytics (.1.2)		Potri.002G209900 [exp]	18.60	0.7705
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Potri.013G108600 [exp]	19.51	0.7512
AT4G15030			unknown protein		Potri.001G266200 [exp]	20.29	0.7498
AT5G18810		SCL28, At-SCL28	SC35-like splicing factor 28 (...		Potri.008G196700 [exp]	22.09	0.7284
					Potri.013G078001 [exp]	22.44	0.7282
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Potri.018G081500 [exp]	24.85	0.7368
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.013G059300 [exp]	26.92	0.7062	GTF901,Pt-TBP1.3

Compare expression of checked genes

Potri.014G166001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.