Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07750 421 / 4e-150 3'-5'-exoribonuclease family protein (.1.2) AT3G12990 97 / 4e-23 RRP45A ribonuclease PH45A (.1.2.3) AT3G60500 96 / 3e-22 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT1G60080 73 / 9e-15 3'-5'-exoribonuclease family protein (.1) AT5G14580 47 / 8e-06 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G61620 45 / 2e-05 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G27490 41 / 0.0006 3'-5'-exoribonuclease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047500 [exp] 103 / 4e-25 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.001G253200 [exp] 99 / 4e-23 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.016G055600 [exp] 75 / 3e-15 AT1G60080 442 / 8e-158 3'-5'-exoribonuclease family protein (.1) Potri.006G051200 [exp] 72 / 3e-14 AT1G60080 434 / 8e-155 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 45 / 2e-05 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.001G347900 [exp] 45 / 4e-05 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.004G212500 [exp] 41 / 0.0005 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001173 [exp] 446 / 1e-159 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2) Lus10001747 [exp] 438 / 1e-156 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2) Lus10012336 [exp] 320 / 5e-110 AT3G07750 340 / 6e-118 3'-5'-exoribonuclease family protein (.1.2) Lus10006382 [exp] 320 / 6e-110 AT3G07750 332 / 1e-114 3'-5'-exoribonuclease family protein (.1.2) Lus10009708 [exp] 91 / 2e-20 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10021789 [exp] 79 / 1e-16 AT1G60080 439 / 7e-157 3'-5'-exoribonuclease family protein (.1) Lus10034605 [exp] 74 / 7e-15 AT1G60080 425 / 1e-150 3'-5'-exoribonuclease family protein (.1) Lus10036022 [exp] 70 / 3e-13 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10037395 [exp] 44 / 0.0001 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10037991 [exp] 42 / 0.0004 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF01138 [poplar] [flax] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [poplar] [flax] PF03725 [poplar] [flax] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Potri.014G166200.3 pacid=42762648 polypeptide=Potri.014G166200.3.p locus=Potri.014G166200 ID=Potri.014G166200.3.v4.1 annot-version=v4.1 ATGGTAGGCCTTTCTCTTGGTGAAAAGCATTTCATACAGGGTGGTATTGATCAAAACCTCCGCTCTGACGGCCGGAAAAGAGATGCTTACCGACCTATTT CTATTGAAACTGGGGTTATCCCTCAGGCAAATGGCTCCGCACGAATCAGGATAGGTGCAACAGAGGTTATTGCCAGTGTGAAGGCTGAGCTTGGAAGACC AAATGCATTGCAACCTGATAAAGGAAAAGTTGCTATATTTGTTGATTGTAGTCCAGTTGCAGAACCAATGTTCGAGGGCAGAGGGGGCGAGGAACTGTCC GCAGAACTCTCAGTTGCTCTTCAGCGTTGTCTCTTGGGTGGTAAAAGTGGAGCAGGGGCTGGAATTGATCTATCATCTTTAATAGTCGCAGAAGGAAAAA TTTGTTGGGATCTTTACATTGATGGGCTTGTCATCAGTTCAGATGGAAATCTTCTTGATGCTCTAGGTGCTGCCATCAAGGCTGCCTTAAGCAATACAGG CATCCCAAGAGTCCAAGTTGCAGCCGGTGCATCAGGAGATGAGCAACCAGAGGTTGACATAAGTGATGAAGAATTTATGCAATTTGACACTTCTGGGGTC CCTGTTATAGTTACTCTAACAAAGGTGGGGAGGCACTACATTGTAGACGCCACTTCAGAAGAAGAGTCCCAGATGAGCTCTGCTGTCTCTGTTTCTATCA GTAGGAAAGGGCAAATTTGTGGGCTTTCCAAACGAGGAAGTGCAGGTCTTGATCCGAGTGTTATTTCTGACATGATTTCCGTGGCTCGTCACATAAGTGA GCAGCTAATTAATAAATTGGACTCTGAAATATCTGCTGCTGAAGCTGATGAAGATGAAATGTGA
AA sequence Show only first row Show all	>Potri.014G166200.3 pacid=42762648 polypeptide=Potri.014G166200.3.p locus=Potri.014G166200 ID=Potri.014G166200.3.v4.1 annot-version=v4.1 MVGLSLGEKHFIQGGIDQNLRSDGRKRDAYRPISIETGVIPQANGSARIRIGATEVIASVKAELGRPNALQPDKGKVAIFVDCSPVAEPMFEGRGGEELS AELSVALQRCLLGGKSGAGAGIDLSSLIVAEGKICWDLYIDGLVISSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGDEQPEVDISDEEFMQFDTSGV PVIVTLTKVGRHYIVDATSEEESQMSSAVSVSISRKGQICGLSKRGSAGLDPSVISDMISVARHISEQLINKLDSEISAAEADEDEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07750			3'-5'-exoribonuclease family p...		Potri.014G166200 [exp]	0	1
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	2.00	0.8196
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Potri.010G189500 [exp]	6.48	0.7895
AT3G63510			FMN-linked oxidoreductases sup...		Potri.009G059900 [exp]	7.07	0.8138
AT4G15010			Mitochondrial substrate carrie...		Potri.001G222400 [exp]	8.24	0.7996
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.016G029700 [exp]	8.77	0.7750
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	9.21	0.7910
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Potri.014G198300 [exp]	9.53	0.7887
AT4G38380			MATE efflux family protein (.1...		Potri.009G143400 [exp]	13.00	0.7622
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Potri.011G104400 [exp]	13.26	0.7874
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G000500 [exp]	14.83	0.7763

Compare expression of checked genes

Potri.014G166200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.