Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SAP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35770 484 / 1e-169 SAP STERILE APETALA, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006384 [exp] 151 / 6e-44 AT5G35770 132 / 2e-37 STERILE APETALA, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006385 [exp] 84 / 2e-19 AT5G35770 48 / 2e-07 STERILE APETALA, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012338 [exp] 82 / 2e-18 AT5G35770 49 / 3e-07 STERILE APETALA, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G166400.2 pacid=42763955 polypeptide=Potri.014G166400.2.p locus=Potri.014G166400 ID=Potri.014G166400.2.v4.1 annot-version=v4.1 ATGTCTTCCTCCTCCTCCTCCTCATCATCATCTAGCAGTGGCAATGGCAATGGCAGCGGTGGTGGTAATTACGGTGCAAGAAGAGCCGGTGAGTACGAAG GGCCATCAAGGTCTCGTCCAAGAGCCATTAACGAGGTTTGGCCTGAGCCTTTTCTGGAAGCTCTTGCTGCCCAAGTCGCCATTGATGCTTCTCGCCTTGT CGGCCGGCTGGTCGCGGCACAGGCACTTGCCAATGTATTTCAGGTGTGTTCAACGTGGCGAGCAGTCTCGCGTTCGGATCCTCTTTGGCACCGTCTCACT CGCGGTATCTGGGGCCGCACCAACCTTTTCCATGACACTTGGCGAGAGGAGTATATCTACCGCCACCAAACGGCCCAAAACTTCCGATCCGGAAGAGCTG TCCATTTCGCTCTCCACTTTGATCCAGCTGATGTGGATGACCCCAACGACCCTGATGCTCTAATATGCCGCTGTCTCGCTTTCTCCGATCGCTACCTTGC ATGCGGTTTTGCTGACGGCGCTGTCCGCCTCTTTGATCTCACCACGCGCCTTCATGCACGCACTTTCCGCCCTGAACACCATGACCGCCTGGGCAGGTTC TCTCGTGCGGTCTCGGGCATCGTCATCACGGCCACACGCTTGGTGTTTGCCACGTTAGATGGTGATATCCACGTGGCGGCGGTAAATAGCAATGCCAATC CACGGAGGGCCCGCTTAGGTGAGGTGTTGAACGACGGGGCATTAGTGGACTTCACGGGCCGTGGGCGATGGTGGGTGGGCCTATACGCTGGGCTTCCGGG CCGGGCCTATCGTGTCTGGGATGGTAACACCGAAGAACCTCTCTTTGAAGGCGGGGCGTTGACTGACCCAGAGGCTGTGTTGGGTTGGCACACGTTGACA GAAGTGACTGAGTTTGTGGGCCGAGTCAGGGTCACGAGTCAGGAATCGGTCGTGGCATGCACGAGTTCGAGACTTGTTATTTTTGATTTGGGGGACCTTG GGGCTGTACTAAGGGAGGAGGACTACACTAACAGGAGAGGCATCTTGGTGGGTTCCTTCGACGTATGCAATGAGGCGTATGTGATTGTAGATGGCAGGGG GAATGCTAGCGTGCGCAGGGCGGACACCTCGGAGGAGATGTGTGGCTTTACCGTGAGGCCTCCAAGGGGAGTGCTTGGGTGCATGAATGGTGGGTACGTG CTAACGTGCGCGGGTGGTGTAGTAAGGGTATGGCAGATAGAGCAGCCTGGTCGCCAAGAGTATTTGTATAGCTTCAGGGAGAGGATAGGCGAGGTAAACG CTCTCGTTGCAGATGAGAGGCACGTGGCAGCAGCATCAAGTGACACGAATATACACCTGTGGGATTTTGGGGCACAGTAG
AA sequence Show only first row Show all	>Potri.014G166400.2 pacid=42763955 polypeptide=Potri.014G166400.2.p locus=Potri.014G166400 ID=Potri.014G166400.2.v4.1 annot-version=v4.1 MSSSSSSSSSSSSGNGNGSGGGNYGARRAGEYEGPSRSRPRAINEVWPEPFLEALAAQVAIDASRLVGRLVAAQALANVFQVCSTWRAVSRSDPLWHRLT RGIWGRTNLFHDTWREEYIYRHQTAQNFRSGRAVHFALHFDPADVDDPNDPDALICRCLAFSDRYLACGFADGAVRLFDLTTRLHARTFRPEHHDRLGRF SRAVSGIVITATRLVFATLDGDIHVAAVNSNANPRRARLGEVLNDGALVDFTGRGRWWVGLYAGLPGRAYRVWDGNTEEPLFEGGALTDPEAVLGWHTLT EVTEFVGRVRVTSQESVVACTSSRLVIFDLGDLGAVLREEDYTNRRGILVGSFDVCNEAYVIVDGRGNASVRRADTSEEMCGFTVRPPRGVLGCMNGGYV LTCAGGVVRVWQIEQPGRQEYLYSFRERIGEVNALVADERHVAAASSDTNIHLWDFGAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Potri.014G166400 [exp]	0	1	SAP.1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.015G003100 [exp]	3.00	0.8698	COMT1,Pt-OMT1.2
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	3.16	0.8345
					Potri.002G048450 [exp]	3.87	0.8751
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.013G108500 [exp]	7.41	0.8488
					Potri.001G218201 [exp]	9.89	0.8203
					Potri.001G360550 [exp]	11.83	0.8104
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.001G158900 [exp]	14.96	0.7879	Pt-RAN1.4
AT3G43660			Vacuolar iron transporter (VIT...		Potri.018G106000 [exp]	16.79	0.7191
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Potri.006G048300 [exp]	19.49	0.8107
					Potri.014G125800 [exp]	19.77	0.8185

Compare expression of checked genes

Potri.014G166400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.