Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HCQL4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 367 / 3e-124 HXXXD-type acyl-transferase family protein (.1) AT3G48720 361 / 1e-121 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 237 / 2e-73 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT2G19070 217 / 9e-66 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G03390 212 / 2e-63 HXXXD-type acyl-transferase family protein (.1) AT1G65450 196 / 1e-57 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G27620 187 / 2e-54 HXXXD-type acyl-transferase family protein (.1) AT5G17540 186 / 6e-54 HXXXD-type acyl-transferase family protein (.1) AT5G57840 178 / 6e-51 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 400 / 4e-137 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 392 / 7e-134 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 362 / 1e-122 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G105500 [exp] 249 / 4e-78 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 243 / 1e-75 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 239 / 3e-74 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 231 / 4e-71 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G447500 [exp] 226 / 4e-69 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 225 / 2e-68 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032554 [exp] 379 / 8e-129 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 374 / 7e-127 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 371 / 2e-125 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 334 / 5e-111 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10025523 [exp] 327 / 2e-108 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 331 / 5e-108 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 325 / 2e-107 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 313 / 1e-102 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10039329 [exp] 303 / 7e-99 AT5G41040 398 / 5e-136 HXXXD-type acyl-transferase family protein (.1.2) Lus10005439 [exp] 295 / 1e-95 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.014G166600.2 pacid=42764348 polypeptide=Potri.014G166600.2.p locus=Potri.014G166600 ID=Potri.014G166600.2.v4.1 annot-version=v4.1 ATGGAAGGAACGGGAAAACATGGAGGTGACCAGCTTTCAGTTAAGAAGTCAGAACCCGTTCTAATAGAACCTGAAACAAGGACTCATAGTGGGTTTTTTT TCTTATGCAATCTTGATCACATGGTCACTCATTCCGTGGAAACAGTGTACTTCTACAAGGCAAAGAAATGGGGAGGCAGTCGTGACACCCTCAGTGACAC ATTTAAACAATCTCTGGCCAAGATTCTGGTGCATTATTACCCTCTCGCAGGGAGATTAAGATTAGGATCTGATGGGAAGTATAATGTGGAGTGTACCAAT GAAGGGGTGTTGTTTGTGGAAGCAAGAGCAAATTGTAACATGGATCAAGTTGACGTTAAAGTAATTATTGATGATCATTCTGAAACAGCAGGGAAGCTTG TCTATGGATCTCCAGATCCTGAGAACATACTGGAAAACCCTCTAATGACTGCACAGGTTACAAGGTTCAGGTGTGGAGGTTTTGCTTTGGGATTATCAAT TAGCCACTTAATAGCTGATGGGCTATCAGCAATGGAGTTTATCAAATCATGGTCTGAAACAGCCAGAGGGATGCCGTTAACCACTAAACCAGTTCTTGAT AGATCAATTTTGAGGTCTAGACAACCTCCTAAAATTGATTTTCATTTCGACCAGTACGCTCCTGCAGAAACCAGTAACGTATCAAACATATCAAATCCAT TTCAAGGAGAGCAGATTCTGACGAAATGCTTCCTGTTTGATTCCAACAAGCTTGCAATACTGAAGAGCATGGCAATGGAGGACGGAACCATCAAAAGCTG CTCAAACTTCACAGCGCTCACAGCTTTTGTGTGGCGTGCTCGCTGCAAGGCACTGCAGATGAATCCTGATCAAACAACTCCACTTCTGTTAGTAGTCGAC GTTCGATCCAAGCTTAATCCACCACTTCCCAAAGGATACTTTGGCAACGGAATTGTCTTAATCACTTGCCCTGGGAGGGCAGGAGAATTGATTAAAAACA CACTATCTTTTGCAGTGGAAGAAGTGCAGAATGGAATAAAAATGGTGAATGAGGAGTTTGTCAGGTCTTGGATTGATTACCTTGAAGTGATGGGAGCAAA GGACTTTCCTTTACACTCCTATTTTAAAGTTTCTTCATGGACAAGACTTTCAATTGAGTGTTCAGACTTTGGATGGGGAGAGCCAGCACAGTTTGCTTGC ACAAACTTGCCTAAAAATTCAGCTTTTTTCCTACCAGATGGAAAAGAAAAGAAGGGCATTAATTTGATTTTGGATTTGCCAGTTACTGCCATGAGCACCT TCCAGGAGCTAATGCTTCTGTAA
AA sequence Show only first row Show all	>Potri.014G166600.2 pacid=42764348 polypeptide=Potri.014G166600.2.p locus=Potri.014G166600 ID=Potri.014G166600.2.v4.1 annot-version=v4.1 MEGTGKHGGDQLSVKKSEPVLIEPETRTHSGFFFLCNLDHMVTHSVETVYFYKAKKWGGSRDTLSDTFKQSLAKILVHYYPLAGRLRLGSDGKYNVECTN EGVLFVEARANCNMDQVDVKVIIDDHSETAGKLVYGSPDPENILENPLMTAQVTRFRCGGFALGLSISHLIADGLSAMEFIKSWSETARGMPLTTKPVLD RSILRSRQPPKIDFHFDQYAPAETSNVSNISNPFQGEQILTKCFLFDSNKLAILKSMAMEDGTIKSCSNFTALTAFVWRARCKALQMNPDQTTPLLLVVD VRSKLNPPLPKGYFGNGIVLITCPGRAGELIKNTLSFAVEEVQNGIKMVNEEFVRSWIDYLEVMGAKDFPLHSYFKVSSWTRLSIECSDFGWGEPAQFAC TNLPKNSAFFLPDGKEKKGINLILDLPVTAMSTFQELMLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.014G166600 [exp]	0	1	HCQL4
AT3G11680			Aluminium activated malate tra...		Potri.016G070100 [exp]	4.47	0.9997
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G005400 [exp]	6.48	0.9997
AT4G18970			GDSL-like Lipase/Acylhydrolase...		Potri.019G008904 [exp]	7.07	0.9997
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G006000 [exp]	8.66	0.9995	CYP81S3,Pt-CYP81.3
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008404 [exp]	9.38	0.9996
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G005402 [exp]	11.53	0.9997
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008902 [exp]	13.07	0.9996
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008406 [exp]	13.26	0.9980
AT5G05130			DNA/RNA helicase protein (.1)		Potri.016G033450 [exp]	13.92	0.9858
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.019G014454 [exp]	14.07	0.9996

Compare expression of checked genes

Potri.014G166600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.