Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APG1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35790 932 / 0 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT5G13110 873 / 0 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 855 / 0 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT1G09420 548 / 0 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2) AT3G27300 493 / 8e-170 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G40760 481 / 3e-165 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059900 [exp] 868 / 0 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.003G168000 [exp] 864 / 0 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.013G005200 [exp] 559 / 0 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2) Potri.017G070200 [exp] 486 / 3e-167 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.001G337400 [exp] 483 / 4e-166 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.005G005866 [exp] 89 / 6e-20 AT1G09420 133 / 4e-36 glucose-6-phosphate dehydrogenase 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006386 [exp] 956 / 0 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10003134 [exp] 861 / 0 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10011340 [exp] 860 / 0 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10012340 [exp] 752 / 0 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10014615 [exp] 476 / 2e-163 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10032079 [exp] 477 / 4e-159 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 442 / 1e-150 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10012339 [exp] 188 / 2e-57 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00479 [poplar] [flax] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02781 [poplar] [flax] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G166800.9 pacid=42762742 polypeptide=Potri.014G166800.9.p locus=Potri.014G166800 ID=Potri.014G166800.9.v4.1 annot-version=v4.1 ATGGCAACACATTTTAGTCCTTGTTCATCTTCTTCAACAAACTTCTTACCATCCTCTTGTTTCAAGAATGAGACAACAGTATTGTTTAGTAGATTTGCTG TTACTGTGCCAAGAAAATCCACCTGGGTAACTCAGAATCATTCAAGAATCCAAGGTAGAAAGCATTTCCATATCAAATCCTCAAATGGGCATCCTCTGAA TGCTGTCTCCTTGCAGGATGGTTTAGATGGAAGTCCTACAGCCAAAGAACATGACAAGTCTCAAGGGAAAGAGAAGCCGGCCATTCCAATCTCAGAAGCA GAGAAAGAAGAGTCTACTCTCAGCATTACTGTTGTTGGAGCTTCAGGGGACCTTGCAAAGAAGAAGATTTTTCCTGCACTTTTTGCTCTTTTTTATGAAG ATTGGCTTCCCGAGAACTTTACAGTATTTGGTTATGCTCGTACAAAACTGACTGATGAGGAGCTCAGGAATATGATTAGCGGAACATTGACTTGCAGAAT TGACCAGAGGGAAAATTGTGAAGACAAAATGGATCAGTTCTTGAAAAGATGCTTTTACCATGCGGGTCAGTATGACTCAGAGGGAGATTTCTCAGAATTG AACAGCAAGCTGAAAGAGAAAGAGGCTGGGAAAGTATCAAATAGGCTGTTTTACTTGTCAATCCCTCCAAACATATTTGTGGATGTGGTAAGAAGTGCCA GCCTTAGAGCTTCTTCATTGAATGGGTGGACAAGGGTCATTGTTGAGAAGCCATTCGGCCGTGACTCAGAGTCATCTGGCGAGTTAACCAGATGTTTGAA GCAGTATCTAACTGAAGATCAAATATTCAGGATTGATCATTACTTGGGAAAGGAGCTTGTTGAGAATCTGTCAGTGCTTCGTTTCTCAAATCTTGTTTTT GAGCCCTTATGGTCAAGGGACTACATCCGCAACGTGCAATTGATATTTTCTGAAGATTTTGGTACAGAAGGTCGTGGAGGCTATTTTGATAACTATGGCA TCATACGAGACATAATGCAAAATCATCTTCTGCAAATACTAGCACTATTTGCCATGGAAACGCCTGTTAGCTTGGATGCCGAGGACGTTAGGAATGAGAA GGTAAAAGTTTTAAGGTCAATGAAACCACTGCAACTTGAAGATGTAATTGTTGGCCAATACAAGGGCCACAGCAAGAGTGGTAGATCGTACCCTGCTTAC ACAGATGATCCAACTGTGCCGAAGGATAGCCGTACTCCAACATTTGCAGCTGCAGCCCTTTTCATCAATAATGCCAGATGGGATGGAGTTCCTTTTCTGA TGAAAGCAGGCAAAGCTCTTCATACCAGGCGAGCAGAGGTCCGAGTGCAGTTCAGACATGTCCCAGGTAACTTGTACAAGCGGAACTTTGGAACTGATTT AGATAAGGCTACAAACGAGCTAGTGCTACGTGTACAACCTGATGAAGCTATATATCTGAAGATAAACAACAAAGTTCCTGGTCTTGGAATGAGATTAGAT CGCAGTGATCTTAATTTGCTTTACAGTGCAAGGTATCCAAGAGAAATACCAGATGCATATGAGAGGCTACTTTTAGATGCCATAGCAGGAGAGAGAAGGT TGTTTATCAGAAGTGATGAGCTTGATGCTGCTTGGGCACTATTCACACCAATGTTGAAGGAGCTGGAACTGAAGAAAATAGTTCCAGAGCTGTACCCCCA TGGCAGCAGAGGTCCAGTTGGAGCACATTATCTTGCTGCGAAATACAATGTTCGATGGGGAGATCTCAGTAGTGATGACTCATGA
AA sequence Show only first row Show all	>Potri.014G166800.9 pacid=42762742 polypeptide=Potri.014G166800.9.p locus=Potri.014G166800 ID=Potri.014G166800.9.v4.1 annot-version=v4.1 MATHFSPCSSSSTNFLPSSCFKNETTVLFSRFAVTVPRKSTWVTQNHSRIQGRKHFHIKSSNGHPLNAVSLQDGLDGSPTAKEHDKSQGKEKPAIPISEA EKEESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTKLTDEELRNMISGTLTCRIDQRENCEDKMDQFLKRCFYHAGQYDSEGDFSEL NSKLKEKEAGKVSNRLFYLSIPPNIFVDVVRSASLRASSLNGWTRVIVEKPFGRDSESSGELTRCLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLVF EPLWSRDYIRNVQLIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVSLDAEDVRNEKVKVLRSMKPLQLEDVIVGQYKGHSKSGRSYPAY TDDPTVPKDSRTPTFAAAALFINNARWDGVPFLMKAGKALHTRRAEVRVQFRHVPGNLYKRNFGTDLDKATNELVLRVQPDEAIYLKINNKVPGLGMRLD RSDLNLLYSARYPREIPDAYERLLLDAIAGERRLFIRSDELDAAWALFTPMLKELELKKIVPELYPHGSRGPVGAHYLAAKYNVRWGDLSSDDS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Potri.014G166800 [exp]	0	1	APG1.2
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131300 [exp]	4.12	0.9620
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.006G180100 [exp]	4.69	0.9562
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	13.41	0.9437
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Potri.009G122300 [exp]	14.69	0.9416
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G085900 [exp]	17.74	0.9440
AT3G16000		MFP1	MAR binding filament-like prot...		Potri.001G179600 [exp]	17.94	0.9244
AT5G25630			Tetratricopeptide repeat (TPR)...		Potri.018G037200 [exp]	18.02	0.9382
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Potri.010G014500 [exp]	19.62	0.9400
AT5G19500			Tryptophan/tyrosine permease (...		Potri.001G224950 [exp]	21.35	0.9344
AT1G53800			unknown protein		Potri.003G073400 [exp]	22.44	0.9377

Compare expression of checked genes

Potri.014G166800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.