Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04515 53 / 1e-08 unknown protein AT3G13130 47 / 1e-06 unknown protein AT2G04495 42 / 7e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007400 [exp] 46 / 4e-06 AT3G13130 60 / 4e-11 unknown protein Potri.001G366500 [exp] 44 / 3e-05 AT3G13130 64 / 5e-12 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006387 [exp] 71 / 4e-15 AT3G13130 70 / 2e-14 unknown protein Lus10012341 [exp] 65 / 8e-13 AT3G13130 71 / 7e-15 unknown protein Lus10016611 [exp] 47 / 2e-06 AT3G13130 62 / 1e-11 unknown protein Lus10004415 [exp] 47 / 2e-06 AT3G13130 54 / 1e-08 unknown protein Lus10039066 [exp] 44 / 3e-05 AT3G13130 61 / 3e-11 unknown protein Lus10038793 [exp] 42 / 9e-05 AT3G13130 59 / 1e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G166900.2 pacid=42762498 polypeptide=Potri.014G166900.2.p locus=Potri.014G166900 ID=Potri.014G166900.2.v4.1 annot-version=v4.1 ATGGCAAGTGTCAGGCATCAAAACTTTGAATCCAATTTTAGCCACTTCAGCCATGTCCACTCTCTCAAGCTAGCAACTAAGTTGTTAGCCCCAGTATGTT TCTTTTCTGTCATATTTTCTTATTCTTCTCTGCTTCCTTTCATATCCAACTTCATGCAATTCCCTAGCTTCAATATTGACAAGAACTACGTGTTCCTCCT CTGCAATGGCATTCTAGTTTTGATTGTCAAGAACTCTGTTCTCAAAATCAGCGATTCTCATCTAGACAGCAGTGCCAACCTCTATGGAGAACAGAACATG AAGAGCGGATACAGTCCGCATAAACTAGTTGAAGTATCAGAGATCACGAAGCCAGCATTGGTCGCAGAGGAAAAGGTTGTCGTGGAAGTGGAAGAAGTAC GAGAAGATGAACAAGGAGGTCATGGGATCATTGTTGTTTATGAAGATGAAGAGGAAGAGGAAGAGGAAGTAATTGGGTTGCTTAGTACAGAGGAATTGAA CAAGAAATGTGATGATTTTATAAGAAAGATGAAAGACGACATCAAATTTGAAGCTCAACAACTTATCATGGTTCGATATTAA
AA sequence Show only first row Show all	>Potri.014G166900.2 pacid=42762498 polypeptide=Potri.014G166900.2.p locus=Potri.014G166900 ID=Potri.014G166900.2.v4.1 annot-version=v4.1 MASVRHQNFESNFSHFSHVHSLKLATKLLAPVCFFSVIFSYSSLLPFISNFMQFPSFNIDKNYVFLLCNGILVLIVKNSVLKISDSHLDSSANLYGEQNM KSGYSPHKLVEVSEITKPALVAEEKVVVEVEEVREDEQGGHGIIVVYEDEEEEEEEVIGLLSTEELNKKCDDFIRKMKDDIKFEAQQLIMVRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04515			unknown protein		Potri.014G166900 [exp]	0	1
AT3G17380			TRAF-like family protein (.1)		Potri.014G055400 [exp]	1.41	0.8160
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.009G086100 [exp]	8.48	0.7627
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037000 [exp]	10.00	0.7835
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G097300 [exp]	10.24	0.7871
					Potri.017G077100 [exp]	11.13	0.7870
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Potri.006G232100 [exp]	15.87	0.6981
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	15.87	0.7768
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.019G098600 [exp]	17.14	0.7658
AT5G23360			GRAM domain-containing protein...		Potri.017G152900 [exp]	18.76	0.6955
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.013G090300 [exp]	18.97	0.7460	Pt-WRKY54.1

Compare expression of checked genes

Potri.014G166900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.