Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28530 967 / 0 FAR1_related FRS10 FAR1-related sequence 10 (.1) AT1G10240 547 / 0 FAR1_related FRS11 FAR1-related sequence 11 (.1) AT4G38180 262 / 8e-77 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G15090 217 / 2e-60 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 203 / 2e-55 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT2G27110 201 / 2e-54 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT1G76320 191 / 1e-51 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT3G06250 187 / 2e-50 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT2G32250 188 / 3e-50 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT5G18960 186 / 1e-49 FAR1_related FRS12 FAR1-related sequence 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G007300 [exp] 941 / 0 AT5G28530 819 / 0.0 FAR1-related sequence 10 (.1) Potri.004G227600 [exp] 549 / 0 AT1G10240 1199 / 0.0 FAR1-related sequence 11 (.1) Potri.002G199300 [exp] 518 / 4e-175 AT1G10240 825 / 0.0 FAR1-related sequence 11 (.1) Potri.T171101 [exp] 499 / 9e-168 AT1G10240 789 / 0.0 FAR1-related sequence 11 (.1) Potri.008G108800 [exp] 499 / 1e-167 AT1G10240 788 / 0.0 FAR1-related sequence 11 (.1) Potri.004G209000 [exp] 270 / 1e-79 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 257 / 5e-75 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 254 / 7e-74 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 239 / 7e-69 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 156 / 2e-40 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10020226 [exp] 52 / 7e-07 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026854 [exp] 50 / 5e-06 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G167000.2 pacid=42763100 polypeptide=Potri.014G167000.2.p locus=Potri.014G167000 ID=Potri.014G167000.2.v4.1 annot-version=v4.1 ATGAAGCCATCAAATAACATATGGATTCGGCGCCAGCAGTGCCCATGTGGAGATTGGAAGTGTTATATTAAGTATGAGGGAGATGATCAGACTTCAGCAA GCTCTCAGCTAGGAAGGAGTGAGACAACATCAACAGAATTAGTCTTCACTCCTTACGTGGGTCAAATTTTCAAAAGTGATGATGATGCTTTTGAATACTA CTCCAATTTTGCTCGGAAGAATGGGTTTTCAATTAGGAAAGCACGGTCGACTGAAAGCCAACATTTAGGGATTTACAGACGAGATTTTGTTTGTTATCGT TCTGGATTTAATCAACCACGGAAAAAGGCAAATGTGGAGCATCCCCGAGATCGGAAATCAATACGATGTGGATGTGATGCAAAATTGTATTTGACAAAGG AAATTGTTGATGGTCTTGCCCAATGGTATGTCTCACAGTTTAGCAATGTTCATAACCATGAACTGCTGGAAGATGACCAAGTGCGTTTGCTACCTGCATA TCGGAAAATACAGGAGGCTGATCAAGAGAGGATTCTTTTGCTATCCAAAGCAGGGTTTCCTATTAATCGGATAGTGAAGGTGTTGGAGTTGGAAAAAGGA GTTCAACCTGGACATTTTCCCTTTATAGAGAAGGATGTTAGGAACTTTGTTCGGACTTGTAAAAAGACTGTTCAAGAAAATGATGCTTTGCTCACTGAGA AGAGAGAGAATGATACATTGGAACTCCTTGAGGCCTGCAAGTCTGTGGCTGAAAGGGATCCAGATTTTGCTTATGATTATACCACAGATGAAAATCAAAA GGTTGAAAATATAGCATGGTTGTATGGGGATTCTGTTCGTGCATATACGTTGTATGGCGATGTAGTTACTTTCGACACCACATATCGTTCTATTACCTAC GGCTTGCTCCTAGGAGTTTGGTTTGGCATGGATAACCATGGAAAAGCAATTTTGTATGGATGTGTTTTGCTGCAAGATGAAAGTTCTCATTCTTTCACAT GGGCTTTACAGACTTTTGTCCGCTTTATAAAAGGAAGACATCCACAGACAATTATAACAGATATGGAGTTGGCCCTTAGGGATGCCATAGCAAGGGAGTT GCCAAATACAAAACATGTTGTATGTATATGGCACATTCTATCTAAGTTATCCAGCTGGTTATCTTTTCCCCTTGGATCGCGGTTTGAAGATTTTAAAGCT GAGTTTGACCTCTTGTGTCATGAGGAAAATGTAGAAGACTTCGAACATCAATGGAATCTTTTGGTTGCCAGATTTGAACTTGTTACAGATAAGCATATGG CTCTACTCTTTTCATATCGAGGATTTTGGTCAATTTCCTACATTAGAGGTTCATTTCTGGCTCGCACAATGGCACCTGAGTTTTCACAGTCTCTGCACAC ATTCCTGAAAAGAATCTTGGGTGGACAAACATGTCTGCAAGCATCTTTTGAGCAGATTGGTCTTGCTGCAACTGTTGGAAATCAAACCAGAGATGGGACG CCGTATATGCATATCAAGACATGCTTGCCAATTGAAGAACATGCACGCAGTGTGCTTACACCTTATGCCTTTAATGTGTTGCAGCATGAAATTGTATTGT CGTTGCAATATGCTATACAAGAAATGGCAGATGGATCATATCTTGTCCAACACATCAAGAAAATGGATGGCGAACGTTTTGTAAATTGGATGCCAGAAGA TGAGCAAATTCACTGTTCTTGCAAGGAATTTGAACATTCGGGGATATTATGTAGGCACTCTCTTAGACTGCTTGAGGTGAAAAACTACTTTCAGCTCCCA GAAAGATATTTTCCCCTTCGCTGGCGACGGGACCAATCACTGGTTCCTATGGATGATCAAAATGCTCAAAGCAACAACGATGAGTGTGCTCAAGCCTTCC ATGCTCTTGCTGAAGCTCTATTGACAGAGTCCTTGATATCGAAGGAACGTTTTAACCATGTACAAAGAGAAATTACGGGGCTCCTTGCTGAAGTTAGAAG TATGCCAGTGGCTGAAGAATTATCTCTGAATATACCCCCTAACAATGTCAGTGAAACGTAG
AA sequence Show only first row Show all	>Potri.014G167000.2 pacid=42763100 polypeptide=Potri.014G167000.2.p locus=Potri.014G167000 ID=Potri.014G167000.2.v4.1 annot-version=v4.1 MKPSNNIWIRRQQCPCGDWKCYIKYEGDDQTSASSQLGRSETTSTELVFTPYVGQIFKSDDDAFEYYSNFARKNGFSIRKARSTESQHLGIYRRDFVCYR SGFNQPRKKANVEHPRDRKSIRCGCDAKLYLTKEIVDGLAQWYVSQFSNVHNHELLEDDQVRLLPAYRKIQEADQERILLLSKAGFPINRIVKVLELEKG VQPGHFPFIEKDVRNFVRTCKKTVQENDALLTEKRENDTLELLEACKSVAERDPDFAYDYTTDENQKVENIAWLYGDSVRAYTLYGDVVTFDTTYRSITY GLLLGVWFGMDNHGKAILYGCVLLQDESSHSFTWALQTFVRFIKGRHPQTIITDMELALRDAIARELPNTKHVVCIWHILSKLSSWLSFPLGSRFEDFKA EFDLLCHEENVEDFEHQWNLLVARFELVTDKHMALLFSYRGFWSISYIRGSFLARTMAPEFSQSLHTFLKRILGGQTCLQASFEQIGLAATVGNQTRDGT PYMHIKTCLPIEEHARSVLTPYAFNVLQHEIVLSLQYAIQEMADGSYLVQHIKKMDGERFVNWMPEDEQIHCSCKEFEHSGILCRHSLRLLEVKNYFQLP ERYFPLRWRRDQSLVPMDDQNAQSNNDECAQAFHALAEALLTESLISKERFNHVQREITGLLAEVRSMPVAEELSLNIPPNNVSET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	0	1
AT5G03450			Transducin/WD40 repeat-like su...		Potri.010G228000 [exp]	2.00	0.7793
AT4G34660			SH3 domain-containing protein ...		Potri.003G105200 [exp]	2.44	0.7756
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	5.19	0.8115	FCA.3
AT5G24350			unknown protein		Potri.012G020000 [exp]	7.21	0.8055
AT3G07530			unknown protein		Potri.004G236000 [exp]	8.71	0.7337
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Potri.006G235400 [exp]	9.64	0.7869
AT2G16250			Leucine-rich repeat protein ki...		Potri.004G155100 [exp]	11.91	0.6450
AT1G77310			unknown protein		Potri.005G067800 [exp]	13.41	0.7587
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.014G077200 [exp]	13.85	0.7458
AT4G33060			Cyclophilin-like peptidyl-prol...		Potri.006G225167 [exp]	13.96	0.7791

Compare expression of checked genes

Potri.014G167000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.