Plant FIBer expression Database

Potri.014G167200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G05320 546 / 0 beta-1,2-N-acetylglucosaminyltransferase II (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001748
[exp]
597 / 0 AT2G05320 601 / 0.0 beta-1,2-N-acetylglucosaminyltransferase II (.1)
Lus10001174
[exp]
584 / 0 AT2G05320 590 / 0.0 beta-1,2-N-acetylglucosaminyltransferase II (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF05060 MGAT2 N-acetylglucosaminyltransferase II (MGAT2)
Representative CDS sequence
>Potri.014G167200.1 pacid=42763978 polypeptide=Potri.014G167200.1.p locus=Potri.014G167200 ID=Potri.014G167200.1.v4.1 annot-version=v4.1
ATGGCTGCAAATTGTAAGAATCCTCGCCCCAAAGCTGGGGCTTATCGCAGATTTTTATCTCTAGTTTTAGTTACTTTGGTAGGGGTTTTGCTGCTGGTTG
TTCTTCTTGGAACAAATTCAGTGTCCAATTTTGTGTCACAGTCTCCGAATGAATCATCGGTTAAGGATTTGAGACCTAGGTATAACTATACAGATTATAG
ATTAATTCCCAATCTCCCCAAACAGAGTGAGTTATCAATTCAATTGGAAAAGCTTAACCAGTTGCGTCCGAGGAATACAGATCTATATCCGAAGTTAGCT
AAGAATCATATAACCATTGTCCTATATGTTCATAATAGGCCCCAGTATCTCAAAGTGGTTGTGGAGAGCTTGTCAAAGGTAGTGGGGATAAGTGAGACTC
TACTTATTGTTAGCCATGATGGGTACTTTGAAGAAATGAACAAGATTGTGGAGGGTATCAAATTTTGCCAAGTGAAGCAGATATTTGCCCCGTATTCACC
CCATGTTTTTCCTGATAGTTTCCCTGGTGTTTCCCCCAACGACTGTAAGGATAAGGATGATGCAGCAAAGAAACATTGCGTTGGGAAACCTGATCAATAT
GGGAACCACCGATCACCGAAGATAGTGTCATTAAAGCATCATTGGTGGTGGATGATGAATACAGTATGGGATGGGCTAAAGGAGACAGAGGGGCATACTG
GCCATATTCTTTTCATAGAGGAGGATCACTTCATTTTTCCTAATGCATACCGCAACTTGCAGAAACTAGCTGCATTGAAGCCTAAGTTATGTCCAGATTG
TTATGCAGCAAATTTAGCACCTTCTGATGTGAATTCAAGAGGGGAAAATTGGGATTGTTTAATTGCTGAGCGGATGGGAAATGTTGGATACTCCTTTAAT
CGGACGGTTTGGAGAAAAATTCATACGAAGGCCAGAGAATTTTGCTTATTTGATGAATACAATTGGGATATAACAATGTGGGCAACAGTCTATCCTTCTT
TTGGCGGTCCTGTTTACACGCTACGAGGGCCAAAAACTAGCGCAGTTCATTTTGGCAAGTGTGGTTTGCATCAGGGTCATGGGGAAAAAGGTGTTTGCAT
TGATAATGGTGCAGTGAATATTGCTGTAGAAGATGTGGATAAGGTGGTCAACATCAATTCAAAATGGGAAGTGCGGTTCTCTGAGAATCAGCCAGGGTAT
AAAGCTGGTTTCAAGGGCTGGGGTGGCTGGGGAGATGAGAGAGACCGTGCACTGTGCTTGAAATTTGCTGAGATGCATCACTTCACAAGCACTGATTCTG
TTCTGTCATCTGATGATTGA
AA sequence
>Potri.014G167200.1 pacid=42763978 polypeptide=Potri.014G167200.1.p locus=Potri.014G167200 ID=Potri.014G167200.1.v4.1 annot-version=v4.1
MAANCKNPRPKAGAYRRFLSLVLVTLVGVLLLVVLLGTNSVSNFVSQSPNESSVKDLRPRYNYTDYRLIPNLPKQSELSIQLEKLNQLRPRNTDLYPKLA
KNHITIVLYVHNRPQYLKVVVESLSKVVGISETLLIVSHDGYFEEMNKIVEGIKFCQVKQIFAPYSPHVFPDSFPGVSPNDCKDKDDAAKKHCVGKPDQY
GNHRSPKIVSLKHHWWWMMNTVWDGLKETEGHTGHILFIEEDHFIFPNAYRNLQKLAALKPKLCPDCYAANLAPSDVNSRGENWDCLIAERMGNVGYSFN
RTVWRKIHTKAREFCLFDEYNWDITMWATVYPSFGGPVYTLRGPKTSAVHFGKCGLHQGHGEKGVCIDNGAVNIAVEDVDKVVNINSKWEVRFSENQPGY
KAGFKGWGGWGDERDRALCLKFAEMHHFTSTDSVLSSDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G05320 beta-1,2-N-acetylglucosaminylt... Potri.014G167200
[exp]
0 1
AT5G22950 VPS24.1 SNF7 family protein (.1) Potri.008G034700
[exp]
3.87 0.6805
AT3G51970 ATASAT1, ASAT1,... ARABIDOPSIS THALIANA STEROL O-... Potri.009G055100
[exp]
5.91 0.7533
AT2G39650 Protein of unknown function (D... Potri.010G203700
[exp]
8.66 0.6312
AT5G16880 Target of Myb protein 1 (.1.2.... Potri.013G082500
[exp]
9.59 0.7452
AT5G13160 PBS1 avrPphB susceptible 1, Protein... Potri.001G060800
[exp]
11.31 0.6465
AT5G28850 Calcium-binding EF-hand family... Potri.013G047300
[exp]
13.85 0.6254
AT4G31130 Protein of unknown function (D... Potri.006G280900
[exp]
15.49 0.6373
AT3G52190 AtPHF1, PHF1 phosphate transporter traffic ... Potri.010G232400
[exp]
16.52 0.5885
AT1G02130 ARA5, AtRABD2a,... ARABIDOPSIS THALIANA RAB D2A, ... Potri.003G081800
[exp]
23.23 0.6458 RAB1.6
AT5G11500 unknown protein Potri.006G241900
[exp]
23.36 0.6079

Potri.014G167200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.