Plant FIBer expression Database

Potri.014G167300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G05310 149 / 1e-47 unknown protein
AT4G13500 148 / 2e-47 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001175
[exp]
137 / 3e-43 AT2G05310 138 / 5e-44 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G167300.1 pacid=42762763 polypeptide=Potri.014G167300.1.p locus=Potri.014G167300 ID=Potri.014G167300.1.v4.1 annot-version=v4.1
ATGGCTGCTAAGGTGGTTCTCTCTTCTTCTCTCAACACCCACTTTCCCGTCCCATCCAAGCCATCATCGTTCTCTTCTGTGGTTTTCACTCTCAGTTCAC
CAAAGAAAAGGGTTCATCATTTCAAAATCCATGCAAATTTAGGAGAGGGGGATGGAGAACTCAAGCCGAAAGGGAAGAAGAAATTTATAACCAGAGAACA
AGAACCAGAACAGTATTGGCAGAGTGCAGGGGAAAGGGAAGGAGAGAATCCCATGAAGACACCTCTTCCTTACATCATTATATTTGGCATGTCAACTCCC
TTTGTGATCTTAGCCATTGCTTTTGCTAATGGCTGGATTAAGGTTCCTGTAAGGTGA
AA sequence
>Potri.014G167300.1 pacid=42762763 polypeptide=Potri.014G167300.1.p locus=Potri.014G167300 ID=Potri.014G167300.1.v4.1 annot-version=v4.1
MAAKVVLSSSLNTHFPVPSKPSSFSSVVFTLSSPKKRVHHFKIHANLGEGDGELKPKGKKKFITREQEPEQYWQSAGEREGENPMKTPLPYIIIFGMSTP
FVILAIAFANGWIKVPVR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G05310 unknown protein Potri.014G167300
[exp]
0 1
AT4G12800 PSAL photosystem I subunit l (.1) Potri.002G239700
[exp]
4.12 0.9641 Pt-PSAL.3
AT4G13150 unknown protein Potri.002G242800
[exp]
4.89 0.9628
AT4G19985 Acyl-CoA N-acyltransferases (N... Potri.019G065400
[exp]
4.89 0.9620
AT1G53800 unknown protein Potri.003G073400
[exp]
7.93 0.9526
AT5G04440 Protein of unknown function (D... Potri.008G030300
[exp]
8.83 0.9432
AT5G48830 unknown protein Potri.002G241200
[exp]
11.31 0.9423
AT4G25170 Uncharacterised conserved prot... Potri.003G107400
[exp]
11.74 0.9441
AT1G80030 Molecular chaperone Hsp40/DnaJ... Potri.003G031800
[exp]
13.41 0.9493
AT5G19940 Plastid-lipid associated prote... Potri.006G276400
[exp]
14.14 0.9570
AT1G66840 PMI2, WEB2 WEAK CHLOROPLAST MOVEMENT UNDE... Potri.017G118900
[exp]
16.43 0.9563

Potri.014G167300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.