Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16360 206 / 2e-65 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT5G21170 154 / 9e-45 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT2G28060 65 / 6e-13 5'-AMP-activated protein kinase beta-2 subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G006400 [exp] 226 / 1e-72 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.006G005800 [exp] 223 / 7e-72 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.001G220800 [exp] 170 / 5e-51 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.009G021600 [exp] 167 / 4e-50 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.009G008700 [exp] 67 / 7e-14 AT2G28060 158 / 2e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.004G213600 [exp] 62 / 5e-12 AT2G28060 156 / 8e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.001G349000 [exp] 42 / 0.0006 AT3G01510 775 / 0.0 like SEX4 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006390 [exp] 246 / 5e-81 AT4G16360 222 / 3e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10012343 [exp] 232 / 3e-76 AT4G16360 220 / 1e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10038783 [exp] 216 / 1e-68 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10039076 [exp] 214 / 4e-68 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10037424 [exp] 163 / 1e-48 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10041287 [exp] 157 / 7e-46 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10003355 [exp] 67 / 1e-13 AT2G28060 150 / 2e-48 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10008427 [exp] 66 / 3e-13 AT2G28060 157 / 6e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10008779 [exp] 44 / 0.0001 AT3G01510 703 / 0.0 like SEX4 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04739 [poplar] [flax] AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain CL0369 [poplar] [flax] GHD PF16561 [poplar] [flax] AMPK1_CBM Glycogen recognition site of AMP-activated protein kinase
Representative CDS sequence Show only first row Show all	>Potri.014G167400.1 pacid=42763486 polypeptide=Potri.014G167400.1.p locus=Potri.014G167400 ID=Potri.014G167400.1.v4.1 annot-version=v4.1 ATGGTGATGGGGAATGCTAGTGGAAAAGGTGATGGTGAAGGCACTTCATCATCAGGAGTTAAATACGGAGGAGAGGAGGGTTATGAGCAAGAGGAGGGTA TGGAGTTTGCTGCACATGGTGGGGTTGCACCCATTAGTTATCATCATAGTCAGGGTGTGTATGCAGAGGCAGAGCCCATGGTTCACTCTCCTCCTCGTAA TCCTGTGGGATACTTGCAGCCTCCTCCCTTGTTCATGCCACAGGTCCCCATGGCTCCATTACCAAGATCTGGTGAAATGACTCATGTGCCAAATTATGCT TTGGTGCCTAATACAACAGATTTTAGGGGTGTGGTTCCTGAGAATCTGAGAGCTGTGATGATAACATGGAGTTTTGATGGCAAGCAAGTAGCTGTGACTG GATCGTGGGATAATTGGAACAGGAGGGAACCCTTGCAGAGGATGGGTAAAGATTTCATTATTATGAAGATGCTACCAGCAGGTGTTTACCACTATCGCTT CATTGTTGATGAAAACTTTAGGCATGTTCCAGACCTACCATGGGAGCGTGATGAATCGGGTACTGCTTACAATATTTTGGATGTGCAGGAGTATGTTCCA GAAGCTCCAGAAAGTCTGTCTGAGTTTGAATCTTCTCCTTCCCCAGTTTCAAGCTACAATAATGAATCTCTGAATGACAATGATTTTGGCAAGCTTCCAC CTGAAATACCTCCACAACTGCAATTAACACCATTAAGCGAACAATCTTCTGCTACGGACGGTTACCAATCACAGCGAAGGCCTCGGCATGCAGTGTTGAA CCATCTTTATATTCAAAACAGCCGAGGTGAGCCCGTTGCACTTGGCTCAACAAATCGCTTTCTCCAGAAGTATGTAACAGTAGTACTATACAAACCCACA AGGAGGTGA
AA sequence Show only first row Show all	>Potri.014G167400.1 pacid=42763486 polypeptide=Potri.014G167400.1.p locus=Potri.014G167400 ID=Potri.014G167400.1.v4.1 annot-version=v4.1 MVMGNASGKGDGEGTSSSGVKYGGEEGYEQEEGMEFAAHGGVAPISYHHSQGVYAEAEPMVHSPPRNPVGYLQPPPLFMPQVPMAPLPRSGEMTHVPNYA LVPNTTDFRGVVPENLRAVMITWSFDGKQVAVTGSWDNWNRREPLQRMGKDFIIMKMLPAGVYHYRFIVDENFRHVPDLPWERDESGTAYNILDVQEYVP EAPESLSEFESSPSPVSSYNNESLNDNDFGKLPPEIPPQLQLTPLSEQSSATDGYQSQRRPRHAVLNHLYIQNSRGEPVALGSTNRFLQKYVTVVLYKPT RR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16360			5'-AMP-activated protein kinas...		Potri.014G167400 [exp]	0	1
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.004G197000 [exp]	4.47	0.8173
AT5G23490			unknown protein		Potri.004G133700 [exp]	4.47	0.8015
					Potri.005G130601 [exp]	4.47	0.8118
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Potri.009G021800 [exp]	5.09	0.7861
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.011G123500 [exp]	6.00	0.8015	NAC003,ATNAC2.1
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	6.92	0.8289
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.011G154600 [exp]	10.90	0.7832
AT3G59670			unknown protein		Potri.005G144800 [exp]	11.22	0.8097
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.014G093700 [exp]	11.31	0.7832	ATPOB1.1
AT4G29790			unknown protein		Potri.006G146700 [exp]	11.48	0.8232

Compare expression of checked genes

Potri.014G167400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.