Plant FIBer expression Database

Potri.014G167700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G167700.1 pacid=42762609 polypeptide=Potri.014G167700.1.p locus=Potri.014G167700 ID=Potri.014G167700.1.v4.1 annot-version=v4.1
ATGAAGTTGCAAAACAAAGTCTTGGAACAAATGGCTTCTCCTTTGTGTTTCTTCAAAATATTCTCACTAGTACTACCATTGATGTTTGCTCTTGCTCCGG
TATTGATTCTTGCTGGTTTTCTTGGATATGGGCTCTTGTCAATCTTTCTCACATCAACAGCGTTAATTTTATCTAGTCTTATCTTGACTTTCTCAAAGCA
AAAACAAACACAAGTGCAGAAATCAGTGACAGATGAGATTGTCATGCCAGATCAGGCAAGCACTTCACCTTACATAGAAGATGTTATATCTAAACCACTT
GTGCTCGAAAAGGAATTCATCACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGTAGAGGTCAGGTTGATGAGT
ATTTGGTTAGATCATCTCAAGTTATAACATCAGAAAGTGACTGCCTTGGTCGCTCATCAACTAGTGAGGACTCAGAAGTGGAATGGCTGTTCCAAGACAA
AATGTTTCAGAGCCGAGAGTGCTCCGATGGATCTATTTCTGACGAGGATAGCCTCATTGAAATCTCCCTTCCAGGTGGACATTACATTTGTGATCATGAG
GAAGATGAGGTCATCTATAATCTGCAGAACAAATTGCCAGATTTTGCACCAGGATCATTTTTCAAACAGCATGGTCTAATGGAGCTTCTGGCAGAATTAA
ATGAGATGAACGAGGAAGAAAATTTGATTGAGATAGACATATCAATGGGCTCCATCAAGTGTCCAAGGTTTGAGATTGAAGCTTAA
AA sequence
>Potri.014G167700.1 pacid=42762609 polypeptide=Potri.014G167700.1.p locus=Potri.014G167700 ID=Potri.014G167700.1.v4.1 annot-version=v4.1
MKLQNKVLEQMASPLCFFKIFSLVLPLMFALAPVLILAGFLGYGLLSIFLTSTALILSSLILTFSKQKQTQVQKSVTDEIVMPDQASTSPYIEDVISKPL
VLEKEFITEEEEEEEEEEEGGGGGGGGRGQVDEYLVRSSQVITSESDCLGRSSTSEDSEVEWLFQDKMFQSRECSDGSISDEDSLIEISLPGGHYICDHE
EDEVIYNLQNKLPDFAPGSFFKQHGLMELLAELNEMNEEENLIEIDISMGSIKCPRFEIEA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G55650 unknown protein Potri.014G167700
[exp]
0 1
AT3G61850 DOF DAG1, AtDof3,7 dof affecting germination 1, D... Potri.012G018700
[exp]
4.24 0.8762
AT2G29660 C2H2ZnF zinc finger (C2H2 type) family... Potri.001G249900
[exp]
4.47 0.8562
AT1G67710 GARP ARR11 response regulator 11 (.1) Potri.010G053100
[exp]
6.92 0.8392
AT5G49660 XIP1 XYLEM INTERMIXED WITH PHLOEM 1... Potri.002G111700
[exp]
7.07 0.8375
AT2G02820 MYB ATMYB88 myb domain protein 88 (.1.2) Potri.010G093000
[exp]
8.66 0.8519 MYB124.2,MYB196
AT2G20560 DNAJ heat shock family protein... Potri.007G136400
[exp]
18.33 0.8279
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.005G004600
[exp]
18.57 0.8253
AT5G64530 NAC ANAC104, XND1 Arabidopsis NAC domain contain... Potri.007G105000
[exp]
23.23 0.8213
AT2G26520 unknown protein Potri.009G106300
[exp]
26.40 0.8022
AT3G02470 SAMDC S-adenosylmethionine decarboxy... Potri.018G101500
[exp]
27.71 0.8074

Potri.014G167700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.