Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07720 484 / 2e-173 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G48180 360 / 2e-124 NSP5 nitrile specifier protein 5 (.1) AT3G16400 348 / 1e-117 ATNSP1, ATMLP-470 MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470, nitrile specifier protein 1 (.1.2) AT3G16410 339 / 3e-112 NSP4 nitrile specifier protein 4 (.1) AT2G33070 325 / 9e-109 NSP2, ATNSP2 NITRILE-SPECIFIER PROTEIN 2, nitrile specifier protein 2 (.1.2.3) AT3G16390 321 / 4e-107 NSP3 nitrile specifier protein 3 (.1) AT1G54040 291 / 4e-97 TASTY, ESP, ESR EPITHIOSPECIFYING SENESCENCE REGULATOR, epithiospecifier protein (.1.2) AT1G18610 121 / 2e-30 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 114 / 5e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G18590 82 / 8e-17 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G062100 [exp] 111 / 5e-27 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 111 / 6e-27 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G214900 [exp] 85 / 6e-18 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G013000 [exp] 85 / 6e-18 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G022000 [exp] 85 / 8e-18 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G008200 [exp] 84 / 9e-18 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G015200 [exp] 78 / 2e-15 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Potri.008G031200 [exp] 75 / 8e-15 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G026900 [exp] 74 / 2e-14 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006392 [exp] 122 / 5e-35 AT3G07720 118 / 7e-34 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017860 [exp] 98 / 2e-22 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10043420 [exp] 91 / 5e-20 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10012345 [exp] 82 / 2e-19 AT3G07720 69 / 4e-15 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10034163 [exp] 87 / 1e-18 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10015176 [exp] 77 / 3e-15 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10037933 [exp] 76 / 4e-15 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10043424 [exp] 75 / 1e-14 AT2G36360 625 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10031497 [exp] 74 / 3e-14 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031420 [exp] 74 / 3e-14 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.014G168300.1 pacid=42763210 polypeptide=Potri.014G168300.1.p locus=Potri.014G168300 ID=Potri.014G168300.1.v4.1 annot-version=v4.1 ATGGCTGTGGTGGGAGTGGGAGGCAAATGGGTCAAGCTTAACCAGAAAGGAACGGGGCTTGGAGCCAGGAGTTCACATGCCATAACCCTAGTTGGACACG AGGCCTATGCTTTTGGCGGCGAGTTTGCACCTCGTGTCCCTGTTGACAACAAACTTCATGTCTTTAATCTCCAGACTCTAACTTGGTCCGTGGCTGATGG AACCGGAGATATCCCTCCACCACGTGTTGGAGTCACAATGGCCACCGTTGGCAAAACCATCTATGTGTTTGGTGGCAGGGATGCCACACATAAGGAGCTC AATGAGCTTTATTCTTTTGACACCTCTACTAATCAGTGGACTCTACTATCAAATGGTGATGCTGGGCCCCCTCACCGGAGCTACCATTCAACTGCATCCG ATGACAGACACGTGTACATCTTTGGTGGCTGTGGTGTTGCTGGCCGGCTTAATGATCTGTGGGAGTATGATGTGATTGAAAAGAAGTGGGTCAAGTATCC CACACCAGGTGACAATTGCAAGGGCAGAGGTGGGACTGGGCTTGCTGTGGCTCAGGGAAAGATATGGGTTGTTTACGGTTTTTCCGGGGTGGAGATGAAT GATGTGCATTGCTTTGATCCGATCCAGGGAACCTGGACTCAAGTCGACACGAGCGGGGAAAAACCATCGGCTCGAAGTGTGTTTTCTACGGTCGGGATTG GGAAATACATAATCATATCTGGTGGAGAAGTAGACCCTAGTGACTTGGGCCACCTTGGTGCTGGAAAATTTGCAAGTGAGGCATATGCATTGGACACTGA TACTCTAACCTGGAAGAGGTTGAATGATGGGCTGGGTTCCGATGATCATCCGGGGCCTCGCGGTTGGTGTGCTTTTGCTGGCGGTTGCCTAAACGGCAAC CAGGGGCTCTTGGTGTGCGGCGGAAACTCCCCTAGTAATGACCGGCTTGACGACATTTTCTTTTTCACTCCTTGTGTGGATGCAATTGGAAGTTGA
AA sequence Show only first row Show all	>Potri.014G168300.1 pacid=42763210 polypeptide=Potri.014G168300.1.p locus=Potri.014G168300 ID=Potri.014G168300.1.v4.1 annot-version=v4.1 MAVVGVGGKWVKLNQKGTGLGARSSHAITLVGHEAYAFGGEFAPRVPVDNKLHVFNLQTLTWSVADGTGDIPPPRVGVTMATVGKTIYVFGGRDATHKEL NELYSFDTSTNQWTLLSNGDAGPPHRSYHSTASDDRHVYIFGGCGVAGRLNDLWEYDVIEKKWVKYPTPGDNCKGRGGTGLAVAQGKIWVVYGFSGVEMN DVHCFDPIQGTWTQVDTSGEKPSARSVFSTVGIGKYIIISGGEVDPSDLGHLGAGKFASEAYALDTDTLTWKRLNDGLGSDDHPGPRGWCAFAGGCLNGN QGLLVCGGNSPSNDRLDDIFFFTPCVDAIGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07720			Galactose oxidase/kelch repeat...		Potri.014G168300 [exp]	0	1
AT2G24530			unknown protein		Potri.001G037500 [exp]	1.73	0.8356
AT5G38220			alpha/beta-Hydrolases superfam...		Potri.004G097300 [exp]	2.44	0.7810
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050500 [exp]	4.47	0.8321
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Potri.015G055300 [exp]	7.14	0.8081
AT1G73660			protein tyrosine kinase family...		Potri.015G040100 [exp]	10.00	0.7375
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.016G053000 [exp]	11.66	0.7717
AT1G67340			HCP-like superfamily protein w...		Potri.001G056800 [exp]	12.96	0.7374
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050180 [exp]	14.83	0.7873
AT4G05160			AMP-dependent synthetase and l...		Potri.017G112800 [exp]	15.09	0.7883
AT3G48080			alpha/beta-Hydrolases superfam...		Potri.012G074600 [exp]	16.61	0.7359	EDS1.1

Compare expression of checked genes

Potri.014G168300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.