Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47650 331 / 2e-113 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G12720 322 / 5e-110 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT4G25434 315 / 2e-107 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT2G04450 303 / 2e-102 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT2G04430 277 / 6e-92 ATNUDT5 nudix hydrolase homolog 5 (.1) AT5G47240 264 / 7e-86 ATNUDT8 nudix hydrolase homolog 8 (.1) AT2G04440 151 / 6e-44 MutT/nudix family protein (.1) AT1G30110 45 / 2e-05 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT3G10620 43 / 0.0001 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G68760 40 / 0.0007 ATNUDX1, ATNUDT1 NUDIX HYDROLASE 1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, nudix hydrolase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G077500 [exp] 388 / 3e-135 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 359 / 1e-124 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 356 / 4e-123 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 348 / 6e-120 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 345 / 5e-118 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 339 / 1e-115 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G080400 [exp] 248 / 7e-80 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 247 / 1e-79 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1) Potri.001G154300 [exp] 247 / 2e-79 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012319 [exp] 350 / 7e-121 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 338 / 1e-115 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10039079 [exp] 324 / 7e-110 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10038780 [exp] 324 / 3e-109 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 313 / 2e-106 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012320 [exp] 313 / 3e-106 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10040169 [exp] 258 / 1e-83 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10004371 [exp] 263 / 2e-82 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10029398 [exp] 51 / 6e-07 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1) Lus10004195 [exp] 49 / 2e-06 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.014G168400.1 pacid=42764147 polypeptide=Potri.014G168400.1.p locus=Potri.014G168400 ID=Potri.014G168400.1.v4.1 annot-version=v4.1 ATGCTGTATATTAGCAATAATATTTGGCTTAACATTAATGATAAGCAGATGATCAGAATCAGGTATCGCAAACTAGTGTTTCTTCTTCCGAGCAAGAACT CTCCGTCACCAGTTTCTCTACCTCCAAATAGGCCTCGTCTGTCGACCACCCTATTATCTTCATCTTCTCGTCATGGATTTTCGAAAGGTAGCAGTTATTT CAAGGCTTTCTTTTCGCCCAGGAAAATTCCAGCTTCAACAAGTTCATTGTCTATTAAGGAGCAAATTGAAGCTGAAAGTAGAGTCGAGCATGTTGGATTA CTCAATGCAGTTGAGGATTTGTATGAAGGAATTGTAATAGAAATGAAAGAACCTGTGGACTCTACAGAATTTATCCCTTCACTCAGAGCATCCATAGTAA AATGGAGGCAACAAGGGAAAAAGGGTGTATGGATCAAATTGCCTATTGGACTTGTCAGTCTTGTTGAACCTATAGTTCAGGAAGGATTTAGATATCATCA TGCTGAACCAGACTACTTGATGCTGGTGTATTGGATTCCTGATACTCCTGATACTCTTCCAGAAAATGCTTCGCATCGTGTAGGGGTTGGGGCTTTTGTA TTGAATAGTAATGGAGAGGTTCTTGTAGTCAAGGAGAATAGTGGAGAATTTAAAGGCACAGGTGTATGGAAGCTACCTACCGGGGTGGTTAATGAGGGTG AGGATATTCCTTCAGCTTCAATTCGAGAAGTTAAGGAAGAGACAGGAATTGACACAGAATTTATGGAAGTTCTAGCATTCAGACAAAGCCACCGATCATT CTTTAGCAAATCAGATCTATTTTTCATTTGCATGCTAAGGCCACGCTCTTTTGACATCCAGAAGCAAGATTTAGAGCTCGAGGCAGCTCAGTGGATGCCA ATTGAAGACTATGTGAACCAACCTTATAACAAAGAACATCAGCTCTTCAAATATGTTGCCGAAATATGCAAAACTAAAGCCAAGATGGACTACAGTGGGT TTTCTGCAATGCCTGTAGGCCCAGATTCTGGTAAAGAAACCTACTTGTTCTTCAACAACAGGGATTTCAACTAA
AA sequence Show only first row Show all	>Potri.014G168400.1 pacid=42764147 polypeptide=Potri.014G168400.1.p locus=Potri.014G168400 ID=Potri.014G168400.1.v4.1 annot-version=v4.1 MLYISNNIWLNINDKQMIRIRYRKLVFLLPSKNSPSPVSLPPNRPRLSTTLLSSSSRHGFSKGSSYFKAFFSPRKIPASTSSLSIKEQIEAESRVEHVGL LNAVEDLYEGIVIEMKEPVDSTEFIPSLRASIVKWRQQGKKGVWIKLPIGLVSLVEPIVQEGFRYHHAEPDYLMLVYWIPDTPDTLPENASHRVGVGAFV LNSNGEVLVVKENSGEFKGTGVWKLPTGVVNEGEDIPSASIREVKEETGIDTEFMEVLAFRQSHRSFFSKSDLFFICMLRPRSFDIQKQDLELEAAQWMP IEDYVNQPYNKEHQLFKYVAEICKTKAKMDYSGFSAMPVGPDSGKETYLFFNNRDFN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.014G168400 [exp]	0	1
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024500 [exp]	6.24	0.8683
AT5G36930			Disease resistance protein (TI...		Potri.004G230000 [exp]	13.41	0.8315
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G328000 [exp]	14.89	0.8582
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.002G228400 [exp]	16.49	0.8566
AT4G37290			unknown protein		Potri.007G049500 [exp]	17.32	0.8532
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025650 [exp]	19.33	0.8178
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.017G066860 [exp]	20.19	0.8468
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	22.29	0.8413
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.012G121412 [exp]	26.68	0.8320
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	33.39	0.7135

Compare expression of checked genes

Potri.014G168400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.