Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07700 1038 / 0 Protein kinase superfamily protein (.1.2.3) AT5G64940 507 / 4e-170 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G24970 258 / 4e-75 Protein kinase superfamily protein (.1.2) AT1G79600 244 / 1e-70 Protein kinase superfamily protein (.1) AT1G71810 225 / 6e-64 Protein kinase superfamily protein (.1) AT3G24190 211 / 5e-58 Protein kinase superfamily protein (.1) AT4G31390 199 / 1e-54 Protein kinase superfamily protein (.1.2) AT2G39190 189 / 2e-50 ATATH8 Protein kinase superfamily protein (.1.2) AT5G24810 163 / 2e-41 ABC1 family protein (.1.2) AT4G24810 156 / 3e-41 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083200 [exp] 514 / 7e-173 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 512 / 5e-172 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.018G014000 [exp] 248 / 6e-72 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G000100 [exp] 240 / 3e-69 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 228 / 2e-64 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 217 / 4e-60 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.006G275600 [exp] 198 / 2e-54 AT4G31390 1058 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 195 / 2e-52 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G276600 [exp] 155 / 6e-39 AT5G24810 1253 / 0.0 ABC1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006363 [exp] 1077 / 0 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 1067 / 0 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 516 / 7e-174 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 500 / 8e-169 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035701 [exp] 245 / 1e-70 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 235 / 3e-67 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017924 [exp] 211 / 1e-58 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10036522 [exp] 195 / 2e-52 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041406 [exp] 193 / 6e-52 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020152 [exp] 191 / 1e-51 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.014G168600.1 pacid=42762337 polypeptide=Potri.014G168600.1.p locus=Potri.014G168600 ID=Potri.014G168600.1.v4.1 annot-version=v4.1 ATGGCGGCAATACTGGCTTCACAAGGTTGTTATTGTCATCATATTGATTTGATGAATGAAGGAAGGATATTATCGGACAATCTCAGTTTCTCGAGTTCGG TTTCGAACCCATTTGTGAAGTTTGACCGAAAAATACGTAACGTGATTTTCTCTGATAAATTAAGAATGGAAGTTGAAATGCGACAAACTGAGTCGCCGGC TTCAAAAAACTTAGGTTCCAGTGGACCACCAGACCCAAAAAAACTAGGGTCCAATGGAAGAGTGATAAAGATGGTGCCTACAAGTGAGGTGATGAAGAAA AGAACCCCGAATGGTAACAGAGTAGATATACAGAATAGAACGAAGCAGGTTATTAATGGAGCGACTTTAGCTAAGAGAGATTCTAGCGCTGCACTTGTAA AGTCAACAAGATCTAGAGAGACTGACAAACTTCCACCACTGGAGGATTTTAGGGTTCTTCCAACAGATGAGGGCTTCAGTTGGGCGGATGAGAATTACAA TGACTTTCGAAGGACCATTGACATTTGGTCCTTTGTTCTGGCCTTGCGTGTTCGTGTTACGTATGACAATGCCAAATGGGCATACGTGAGAGGTTTCACA GAAGATAAACAGAAAAGCCGTAGGAGAAGAACTGCTTCATGGCTACGGGAGTGTGTATTGCAGCTTGGTCCAACTTTTATCAAACTTGGACAATTATCCT CAACAAGGTCAGATCTATTTCCCCGAGAGTTTGTGGATGAGCTTGCCAAGTTGCAGGATAGGGTGCCTGCCTTCTCTCCGAAGAAAGCAAGAAGTTTCAT TGAGAGAGAATTGGGAGCTCCGATTGATGTGCTGTTTAAGGCGTTTGAGGACCAGCCAATTGCTGCAGCTAGTCTTGGTCAGGTGCACCGCGCCATCCTG CATAATGGGGAGAAAGTAGTTGTGAAAGTTCAAAGGCCTGGTCTCAAGAAACTTTTTGACATCGACTTAAGAAATTTAAAGCTAATCGCAGAGTACTTTC AGAGAAGCGAGACTTTTGGTGGTGCAAGTAGAGACTGGATTGGCATATATGAAGAATGCAAAAGGATTTTGTACGAGGAGATTGATTATATTAATGAAGG AAAAAATGCTGACAGATTCCGCCGAGATTTTCGGAATATAAAATGGGTCCGAGTGCCGCTGGTATTCTGGGATTATACTGCCACGAAGGTTTTGACTTTG GAGTATGTACCGGGGGTTAAGATAAATCATTTAGGTATGCTAGATTCACGGGGATATGATCGTTCACGAATTTCATCACGGGCCATAGAAGCATATTTGA TTCAGATTCTGAAAACTGGTTTCTTTCATGCTGATCCTCATCCTGGAAATCTCGCTGTCGATGTGGATGAATCACTTATCTATTATGACTTTGGTATGAT GGGAGAGATCAAAACTTTTACACGCGAGAGGCTACTTGAACTTTTCTATGCAGTTTATGAAAAAGACGCAAAAAAGGTTATTCAAAGCCTCATAGATCTT GAAGCACTTCAGCCCACTGGAGATTTATCATCTGTGAGGAGATCTGTACAGTTTTTCCTGAACAATTTACTGAGCCAGACACCTGATCAGCAGCAGACTT TGGCTGCAATTGGGGAGGATTTGTTTGCAATAGCTCAGGATCAGCCATTCCTGTTTCCATCCACATTTACCTTCGTCATTAGAGCATTTTCAACGCTTGA AGGTATCGGGTACATTCTTGATCCAGATTTTTCCTTTGTGAAGATTGCTGCCCCTTATGCGCAGGAGCTTTTAGATGGAAGACAAAGGCCACGTAATGGA ACACGACTAGTTGAGGAAATAAGGAAACAAGCAAATGATGCTAGAAGTTCCACCATATCCATGCCGTACAGAATCCAACGAATAGAGGATTTTGTGAAAC AACTTGAAGCGGGTGACTTGAAACTCCGAGTCCGGGTGCTTGAGTCAGAAAGAGCTGCTCAAAAAGCAACAATACTACAAATGGCGACCATGTATACAGT CTTAGGAGGTACCCTACTAAACCTCGGGGTAACCTTCAGCAACCAGGGCAGTCAAGTTTTCGCAAATGGATCGTTCATTGGTGCAGGAGTTTTTCTGACA CTTCTTCTAAGGTCGATGCAAAGGGTAAAGAAGCTTGATAAATTTGAGAAGATGGTATGA
AA sequence Show only first row Show all	>Potri.014G168600.1 pacid=42762337 polypeptide=Potri.014G168600.1.p locus=Potri.014G168600 ID=Potri.014G168600.1.v4.1 annot-version=v4.1 MAAILASQGCYCHHIDLMNEGRILSDNLSFSSSVSNPFVKFDRKIRNVIFSDKLRMEVEMRQTESPASKNLGSSGPPDPKKLGSNGRVIKMVPTSEVMKK RTPNGNRVDIQNRTKQVINGATLAKRDSSAALVKSTRSRETDKLPPLEDFRVLPTDEGFSWADENYNDFRRTIDIWSFVLALRVRVTYDNAKWAYVRGFT EDKQKSRRRRTASWLRECVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPKKARSFIERELGAPIDVLFKAFEDQPIAAASLGQVHRAIL HNGEKVVVKVQRPGLKKLFDIDLRNLKLIAEYFQRSETFGGASRDWIGIYEECKRILYEEIDYINEGKNADRFRRDFRNIKWVRVPLVFWDYTATKVLTL EYVPGVKINHLGMLDSRGYDRSRISSRAIEAYLIQILKTGFFHADPHPGNLAVDVDESLIYYDFGMMGEIKTFTRERLLELFYAVYEKDAKKVIQSLIDL EALQPTGDLSSVRRSVQFFLNNLLSQTPDQQQTLAAIGEDLFAIAQDQPFLFPSTFTFVIRAFSTLEGIGYILDPDFSFVKIAAPYAQELLDGRQRPRNG TRLVEEIRKQANDARSSTISMPYRIQRIEDFVKQLEAGDLKLRVRVLESERAAQKATILQMATMYTVLGGTLLNLGVTFSNQGSQVFANGSFIGAGVFLT LLLRSMQRVKKLDKFEKMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	0	1
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Potri.010G045900 [exp]	1.41	0.9563	ATTAP1.1
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	1.41	0.9681
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.003G145500 [exp]	4.58	0.9135
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.005G181600 [exp]	6.00	0.9151
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	6.32	0.9267
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003100 [exp]	8.94	0.9105
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.014G139500 [exp]	9.32	0.9325	Pt-VAR2.3
AT3G60070			Major facilitator superfamily ...		Potri.001G232100 [exp]	11.61	0.8990
AT1G05675			UDP-Glycosyltransferase superf...		Potri.017G032300 [exp]	11.83	0.9288
AT1G11360			Adenine nucleotide alpha hydro...		Potri.013G150200 [exp]	12.00	0.9046

Compare expression of checked genes

Potri.014G168600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.