Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48230 664 / 0 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) AT5G47720 640 / 0 Thiolase family protein (.1.2.3.4.5) AT5G48880 188 / 2e-55 PKT2, PKT1, KAT5 PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, 3-KETO-ACYL-COENZYME A THIOLASE 5, peroxisomal 3-keto-acyl-CoA thiolase 2 (.1.2.3) AT2G33150 187 / 9e-55 PED1, KAT2, PKT3 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) AT1G04710 187 / 1e-54 KAT1, PKT4 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004400 [exp] 676 / 0 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Potri.001G051900 [exp] 185 / 6e-54 AT2G33150 780 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.002G216400 [exp] 182 / 1e-52 AT2G33150 660 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.001G051800 [exp] 173 / 2e-49 AT2G33150 673 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012317 [exp] 693 / 0 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10006362 [exp] 657 / 0 AT5G47720 652 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10038749 [exp] 614 / 0 AT5G47720 663 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10039109 [exp] 603 / 0 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10011879 [exp] 187 / 1e-54 AT2G33150 725 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10023672 [exp] 187 / 1e-54 AT2G33150 818 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10022812 [exp] 181 / 4e-52 AT2G33150 702 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10011748 [exp] 168 / 5e-47 AT2G33150 767 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF00108 [poplar] [flax] Thiolase_N Thiolase, N-terminal domain CL0046 [poplar] [flax] Thiolase PF02803 [poplar] [flax] Thiolase_C Thiolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G168700.4 pacid=42762493 polypeptide=Potri.014G168700.4.p locus=Potri.014G168700 ID=Potri.014G168700.4.v4.1 annot-version=v4.1 ATGACTTCTGCAGAGATAAAGCCGAGAGATGTTTGTGTTGTTGGTGTTGCCCGTACACCAATGGGTGGCTTTCTGGGTTCACTGTCATCTTTACCTGCGA CCAAGCTCGGATCTATAGCTATTGAAGCTGCTCTTAAAAGGGCCAATGTTGATCCTTCAACTGTGCAAGAAGTGTTTTTTGGCAATGTTCTCTGTGCGAA TTTAGGACAGGCTCCTGCTAGACAGGCTGCATTAGGCGCAGGAATTTCTAATTCAGTAGTTTGCACGACCATTAACAAAGTTTGTGCTTCAGGGATGAAA GCAACCATGCTTGCAGCCCAGAGTATCCAGTTGGGTATTAATGATGTTGTTGTTGCTGGAGGCATGGAGAGCATGTCAAATGTCCCCAAGTACTTGGCAG AAGCAAGGAAGGGATCCCGACTTGGACACGATTCACTGGTTGATGGAATGCTCAAAGACGGTTTGTGGGATGTTTATAATGATTATGGAATGGGAAATTG TGCTGAATTATGCGCTGATACTCATTCGATACCCAGGGACGACCAGGATAACTACGCTATTCAGAGCTTTGAGCGTGGTATTGCTGCACAAGATAGTGGT GCCTTTGCATGGGAAATTGTTCCGGTTGAAGTCCCTGGAGGAAGAGGAAGACCTTCAACAATTATTGATAAGGATGAAGGTTTAGGAAAGTTTGATCCTG CAAAATTGAGGAAGCTCCGACCAAGTTTCAAAGAATCTGGAGGCTCAGTTACTGCTGGCAATGCCTCTAGCATAAGTGATGGTGCTGCTGCTTTAGTTCT AGTGAGTGGAGAGAAGGCACTTCAGCTTGGACTGAAGGTGCTTGCAAAGGTTACAGGATATGCTGATGCTGCTCAGGCGCCAGAGCTTTTTACAACATCT CCAGCCCTCGCCATACCTAAAGCTATCTCAAATGCTGGCTTGGATGCTTCCCAAGTTGATTACTATGAAATAAACGAAGCCTTTGCTGTGGTGGCTCTTG CGAATCAGAAATTGCTTGGACTTAATCCAGAAAAGGTCAATGTACATGGTGGAGCTGTATCCTTGGGGCATCCACTAGGCTGTAGCGGAGCTCGTATCTT GGTCACACTTTTAGGGGTATTGAAGCAGAAACATGGTAAATATGGTGTTGGTGGTGTTTGCAATGGAGGCGGCGGTGCCTCCGCGGTAGTTGTAGAGCTT CTGTAG
AA sequence Show only first row Show all	>Potri.014G168700.4 pacid=42762493 polypeptide=Potri.014G168700.4.p locus=Potri.014G168700 ID=Potri.014G168700.4.v4.1 annot-version=v4.1 MTSAEIKPRDVCVVGVARTPMGGFLGSLSSLPATKLGSIAIEAALKRANVDPSTVQEVFFGNVLCANLGQAPARQAALGAGISNSVVCTTINKVCASGMK ATMLAAQSIQLGINDVVVAGGMESMSNVPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDYGMGNCAELCADTHSIPRDDQDNYAIQSFERGIAAQDSG AFAWEIVPVEVPGGRGRPSTIIDKDEGLGKFDPAKLRKLRPSFKESGGSVTAGNASSISDGAAALVLVSGEKALQLGLKVLAKVTGYADAAQAPELFTTS PALAIPKAISNAGLDASQVDYYEINEAFAVVALANQKLLGLNPEKVNVHGGAVSLGHPLGCSGARILVTLLGVLKQKHGKYGVGGVCNGGGGASAVVVEL L

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48230		EMB1276, ACAT2	EMBRYO DEFECTIVE 1276, acetoac...		Potri.014G168700 [exp]	0	1
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.004G208500 [exp]	10.39	0.8728	HMGR3.4
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G149300 [exp]	11.04	0.8612	CYP716.1
AT5G34930			arogenate dehydrogenase (.1)		Potri.006G062600 [exp]	12.12	0.8236
AT1G30760			FAD-binding Berberine family p...		Potri.011G160900 [exp]	15.49	0.8531
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.007G044000 [exp]	15.87	0.8427
AT3G54250			GHMP kinase family protein (.1...		Potri.010G237900 [exp]	18.11	0.7457	MVD1.2
AT1G30760			FAD-binding Berberine family p...		Potri.011G161100 [exp]	20.49	0.8609
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.001G229500 [exp]	22.02	0.8506
AT2G26190			calmodulin-binding family prot...		Potri.006G147900 [exp]	22.62	0.8446
					Potri.009G113550 [exp]	23.32	0.8145

Compare expression of checked genes

Potri.014G168700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.